KEGG   PATHWAY: erc00020
Entry
erc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Eremothecium cymbalariae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
erc00020  Citrate cycle (TCA cycle)
erc00020

Module
erc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:erc00020]
erc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:erc00020]
erc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:erc00020]
erc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:erc00020]
erc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:erc00020]
Other DBs
GO: 0006099
Organism
Eremothecium cymbalariae [GN:erc]
Gene
Ecym_1280  hypothetical protein [KO:K01647] [EC:2.3.3.1]
Ecym_8368  Hypothetical protein [KO:K01681] [EC:4.2.1.3]
Ecym_3265  Hypothetical protein [KO:K00031] [EC:1.1.1.42]
Ecym_1306  hypothetical protein [KO:K00031] [EC:1.1.1.42]
Ecym_2313  Hypothetical protein [KO:K00030] [EC:1.1.1.41]
Ecym_3316  Hypothetical protein [KO:K00030] [EC:1.1.1.41]
Ecym_5401  hypothetical protein [KO:K00164] [EC:1.2.4.2]
Ecym_4259  hypothetical protein [KO:K00658] [EC:2.3.1.61]
Ecym_1455  hypothetical protein [KO:K00382] [EC:1.8.1.4]
Ecym_4557  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
Ecym_5568  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
Ecym_8248  Hypothetical protein [KO:K00234] [EC:1.3.5.1]
Ecym_8411  Hypothetical protein [KO:K00235] [EC:1.3.5.1]
Ecym_6091  hypothetical protein [KO:K00236]
Ecym_4190  hypothetical protein [KO:K00237]
Ecym_3016  Hypothetical protein [KO:K01679] [EC:4.2.1.2]
Ecym_2046  Hypothetical protein [KO:K00026] [EC:1.1.1.37]
Ecym_3407  Hypothetical protein [KO:K00026] [EC:1.1.1.37]
Ecym_3071  Hypothetical protein [KO:K01958] [EC:6.4.1.1]
Ecym_4013  hypothetical protein [KO:K01610] [EC:4.1.1.49]
Ecym_3509  Hypothetical protein [KO:K00161] [EC:1.2.4.1]
Ecym_3066  Hypothetical protein [KO:K00162] [EC:1.2.4.1]
Ecym_5391  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
erc00010  Glycolysis / Gluconeogenesis
erc00053  Ascorbate and aldarate metabolism
erc00061  Fatty acid biosynthesis
erc00062  Fatty acid elongation
erc00071  Fatty acid degradation
erc00190  Oxidative phosphorylation
erc00220  Arginine biosynthesis
erc00250  Alanine, aspartate and glutamate metabolism
erc00280  Valine, leucine and isoleucine degradation
erc00350  Tyrosine metabolism
erc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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