PATHWAY: gem01100 Help Entry gem01100                    Pathway                                 Name Metabolic pathways - Geobacter sp. M21 Class BRITE hierarchy Pathway map gem01100   Metabolic pathways Module gem_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:gem01100] gem_M00002   Glycolysis, core module involving three-carbon compounds [PATH:gem01100] gem_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gem01100] gem_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:gem01100] gem_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gem01100] gem_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:gem01100] gem_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gem01100] gem_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gem01100] gem_M00015   Proline biosynthesis, glutamate => proline [PATH:gem01100] gem_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:gem01100] gem_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:gem01100] gem_M00021   Cysteine biosynthesis, serine => cysteine [PATH:gem01100] gem_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:gem01100] gem_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:gem01100] gem_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:gem01100] gem_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:gem01100] gem_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:gem01100] gem_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:gem01100] gem_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:gem01100] gem_M00063   CMP-KDO biosynthesis [PATH:gem01100] gem_M00082   Fatty acid biosynthesis, initiation [PATH:gem01100] gem_M00083   Fatty acid biosynthesis, elongation [PATH:gem01100] gem_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:gem01100] gem_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:gem01100] gem_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:gem01100] gem_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:gem01100] gem_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:gem01100] gem_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:gem01100] gem_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:gem01100] gem_M00155   Cytochrome c oxidase, prokaryotes [PATH:gem01100] gem_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:gem01100] gem_M00168   CAM (Crassulacean acid metabolism), dark [PATH:gem01100] gem_M00169   CAM (Crassulacean acid metabolism), light [PATH:gem01100] gem_M00175   Nitrogen fixation, nitrogen => ammonia [PATH:gem01100] gem_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:gem01100] gem_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gem01100] gem_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:gem01100] gem_M00527   Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:gem01100] gem_M00541   Benzoyl-CoA degradation, benzoyl-CoA => 3-hydroxypimeloyl-CoA [PATH:gem01100] gem_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:gem01100] gem_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:gem01100] gem_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:gem01100] gem_M00621   Glycine cleavage system [PATH:gem01100] gem_M00793   dTDP-L-rhamnose biosynthesis [PATH:gem01100] gem_M00844   Arginine biosynthesis, ornithine => arginine [PATH:gem01100] gem_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:gem01100] gem_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:gem01100] gem_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:gem01100] gem_M00930   Menaquinone biosynthesis, futalosine pathway [PATH:gem01100] gem_M00970   Proline degradation, proline => glutamate [PATH:gem01100] Organism Geobacter sp. M21 [GN:gem] Related pathway gem00010   Glycolysis / Gluconeogenesis gem00020   Citrate cycle (TCA cycle) gem00030   Pentose phosphate pathway gem00040   Pentose and glucuronate interconversions gem00051   Fructose and mannose metabolism gem00052   Galactose metabolism gem00053   Ascorbate and aldarate metabolism gem00061   Fatty acid biosynthesis gem00071   Fatty acid degradation gem00130   Ubiquinone and other terpenoid-quinone biosynthesis gem00190   Oxidative phosphorylation gem00220   Arginine biosynthesis gem00230   Purine metabolism gem00240   Pyrimidine metabolism gem00250   Alanine, aspartate and glutamate metabolism gem00260   Glycine, serine and threonine metabolism gem00261   Monobactam biosynthesis gem00270   Cysteine and methionine metabolism gem00280   Valine, leucine and isoleucine degradation gem00290   Valine, leucine and isoleucine biosynthesis gem00300   Lysine biosynthesis gem00310   Lysine degradation gem00330   Arginine and proline metabolism gem00332   Carbapenem biosynthesis gem00340   Histidine metabolism gem00350   Tyrosine metabolism gem00360   Phenylalanine metabolism gem00362   Benzoate degradation gem00380   Tryptophan metabolism gem00400   Phenylalanine, tyrosine and tryptophan biosynthesis gem00401   Novobiocin biosynthesis gem00410   beta-Alanine metabolism gem00430   Taurine and hypotaurine metabolism gem00450   Selenocompound metabolism gem00470   D-Amino acid metabolism gem00480   Glutathione metabolism gem00500   Starch and sucrose metabolism gem00520   Amino sugar and nucleotide sugar metabolism gem00521   Streptomycin biosynthesis gem00523   Polyketide sugar unit biosynthesis gem00525   Acarbose and validamycin biosynthesis gem00540   Lipopolysaccharide biosynthesis gem00541   O-Antigen nucleotide sugar biosynthesis gem00543   Exopolysaccharide biosynthesis gem00550   Peptidoglycan biosynthesis gem00552   Teichoic acid biosynthesis gem00561   Glycerolipid metabolism gem00562   Inositol phosphate metabolism gem00564   Glycerophospholipid metabolism gem00592   alpha-Linolenic acid metabolism gem00620   Pyruvate metabolism gem00623   Toluene degradation gem00625   Chloroalkane and chloroalkene degradation gem00626   Naphthalene degradation gem00627   Aminobenzoate degradation gem00630   Glyoxylate and dicarboxylate metabolism gem00640   Propanoate metabolism gem00650   Butanoate metabolism gem00660   C5-Branched dibasic acid metabolism gem00670   One carbon pool by folate gem00680   Methane metabolism gem00730   Thiamine metabolism gem00740   Riboflavin metabolism gem00750   Vitamin B6 metabolism gem00760   Nicotinate and nicotinamide metabolism gem00770   Pantothenate and CoA biosynthesis gem00780   Biotin metabolism gem00785   Lipoic acid metabolism gem00790   Folate biosynthesis gem00860   Porphyrin metabolism gem00900   Terpenoid backbone biosynthesis gem00907   Pinene, camphor and geraniol degradation gem00909   Sesquiterpenoid and triterpenoid biosynthesis gem00910   Nitrogen metabolism gem00920   Sulfur metabolism gem00999   Biosynthesis of various plant secondary metabolites gem01055   Biosynthesis of vancomycin group antibiotics KO pathway ko01100

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