KEGG   PATHWAY: lms00020
Entry
lms00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Listeria monocytogenes Finland 1998
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lms00020  Citrate cycle (TCA cycle)
lms00020

Module
lms_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lms00020]
lms_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lms00020]
Other DBs
GO: 0006099
Organism
Listeria monocytogenes Finland 1998 [GN:lms]
Gene
LMLG_1762  methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LMLG_1162  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
LMLG_1763  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
LMLG_2975  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMLG_2332  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMLG_0883  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
LMLG_2313  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LMLG_2336  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
LMLG_2335  pyruvate dehydrogenase E1 subunit beta subunit [KO:K00162] [EC:1.2.4.1]
LMLG_2963  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
LMLG_2489  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lms00010  Glycolysis / Gluconeogenesis
lms00061  Fatty acid biosynthesis
lms00071  Fatty acid degradation
lms00190  Oxidative phosphorylation
lms00220  Arginine biosynthesis
lms00250  Alanine, aspartate and glutamate metabolism
lms00280  Valine, leucine and isoleucine degradation
lms00350  Tyrosine metabolism
lms00470  D-Amino acid metabolism
lms00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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