KEGG   PATHWAY: nit00020
Entry
nit00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nitrosomonas sp. AL212
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nit00020  Citrate cycle (TCA cycle)
nit00020

Module
nit_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nit00020]
nit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nit00020]
nit_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nit00020]
nit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nit00020]
Other DBs
GO: 0006099
Organism
Nitrosomonas sp. AL212 [GN:nit]
Gene
NAL212_1783  citrate synthase I [KO:K01647] [EC:2.3.3.1]
NAL212_2041  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
NAL212_0655  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
NAL212_1782  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
NAL212_1781  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
NAL212_1335  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NAL212_1028  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NAL212_1391  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NAL212_1322  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
NAL212_1323  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
NAL212_2000  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NAL212_1785  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
NAL212_2002  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NAL212_2001  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NAL212_2499  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
NAL212_2821  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NAL212_1106  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
NAL212_1105  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
NAL212_1580  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
NAL212_1581  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nit00010  Glycolysis / Gluconeogenesis
nit00053  Ascorbate and aldarate metabolism
nit00061  Fatty acid biosynthesis
nit00071  Fatty acid degradation
nit00190  Oxidative phosphorylation
nit00220  Arginine biosynthesis
nit00250  Alanine, aspartate and glutamate metabolism
nit00280  Valine, leucine and isoleucine degradation
nit00350  Tyrosine metabolism
nit00470  D-Amino acid metabolism
nit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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