KEGG   PATHWAY: pgl00630Help
Entry
pgl00630                    Pathway                                

Name
Glyoxylate and dicarboxylate metabolism - Phaeobacter inhibens 2.10
Class
Metabolism; Carbohydrate metabolism
BRITE hierarchy
Pathway map
pgl00630  Glyoxylate and dicarboxylate metabolism
pgl00630

Ortholog table
Module
pgl_M00373  Ethylmalonyl pathway [PATH:pgl00630]
pgl_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pgl00630]
Organism
Phaeobacter inhibens 2.10 [GN:pgl]
Gene
PGA2_c09780  glcB; malate synthase GlcB [KO:K01638] [EC:2.3.3.9]
PGA2_c03210  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
PGA2_c16800  gltA1; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
PGA2_c26800  gltA2; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
PGA2_c17920  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PGA2_c12030  fadA2; 3-ketoacyl-CoA thiolase FadA [KO:K00626] [EC:2.3.1.9]
PGA2_c03670  fadA1; 3-ketoacyl-CoA thiolase FadA [KO:K00626] [EC:2.3.1.9]
PGA2_c02990  phaA; acetyl-CoA acetyltransferase PhaA [KO:K00626] [EC:2.3.1.9]
PGA2_c31450  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PGA2_c32560  phbA; acetyl-CoA acetyltransferase PhbA [KO:K00626] [EC:2.3.1.9]
PGA2_c02980  phaB; acetoacetyl-CoA reductase PhaB [KO:K00023] [EC:1.1.1.36]
PGA2_c22980  maoC like -like protein [KO:K17865] [EC:4.2.1.55]
PGA2_c03420  crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
PGA2_c22500  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
PGA2_c03390  mutB; methylmalonyl-CoA mutase large subunit [KO:K14447] [EC:5.4.99.63]
PGA2_c29780  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
PGA2_c03270  hypothetical protein [KO:K14449] [EC:4.2.1.148]
PGA2_c28380  putative citrate lyase subunit beta [KO:K08691] [EC:4.1.3.25 4.1.3.24]
PGA2_c03240  putative citrate lyase subunit beta [KO:K14451] [EC:3.1.2.30]
PGA2_c20490  pccA; propionyl-CoA carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
PGA2_c20530  pccB; propionyl-CoA carboxylase beta chain [KO:K01966] [EC:2.1.3.15 6.4.1.3]
PGA2_c20460  bhbA; methylmalonyl-CoA mutase BhbA [KO:K01847] [EC:5.4.99.2]
PGA2_c27630  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.3.15]
PGA2_c27620  glcE; glycolate oxidase subunit GlcE [KO:K11472]
PGA2_c27610  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473]
PGA2_c23420  hypothetical protein [KO:K03781] [EC:1.11.1.6]
PGA2_c23440  putative catalase [KO:K03781] [EC:1.11.1.6]
PGA2_c08300  hydrolase, HAD-superfamily [KO:K01091] [EC:3.1.3.18]
PGA2_c10110  phosphoglycolate phosphatase-like protein [KO:K01091] [EC:3.1.3.18]
PGA2_c28920  putative hydrolase [KO:K01091] [EC:3.1.3.18]
PGA2_c21960  putative serine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.51 2.6.1.45 2.6.1.44]
PGA2_c21290  putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PGA2_c17810  glnA; glutamine synthetase GlnA [KO:K01915] [EC:6.3.1.2]
PGA2_c11350  puuA1; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
PGA2_c11370  puuA2; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
PGA2_c25200  putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PGA2_c05110  glutamine synthase-like protein [KO:K01915] [EC:6.3.1.2]
PGA2_c28550  hypothetical protein [KO:K01915] [EC:6.3.1.2]
PGA2_c11870  glyA; serine hydroxymethyltransferase GlyA [KO:K00600] [EC:2.1.2.1]
PGA2_c22590  putative serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PGA2_95p400  gcvP; glycine dehydrogenase GcvP [KO:K00281] [EC:1.4.4.2]
PGA2_c05130  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PGA2_95p380  gcvT; aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PGA2_c17190  lpdA1; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
PGA2_95p350  lpdA; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
PGA2_c03140  lpd; dihydrolipoyl dehydrogenase 2 [KO:K00382] [EC:1.8.1.4]
PGA2_95p390  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PGA2_c05120  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PGA2_c01320  putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
PGA2_c26260  gyaR2; glyoxylate reductase GyaR [KO:K00015] [EC:1.1.1.26]
PGA2_c24600  putative glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.81 1.1.1.79]
PGA2_c00110  dmlA; D-malate dehydrogenase (decarboxylating) [KO:K07246] [EC:1.1.1.83 4.1.1.73 1.1.1.93]
PGA2_c26010  eda; KHG/KDPG aldolase Eda [KO:K01625] [EC:4.1.3.42 4.1.2.14]
PGA2_c25660  putative formate dehydrogenase H [KO:K00123] [EC:1.17.1.9]
PGA2_c23850  fdhF; formate dehydrogenase H [KO:K00123] [EC:1.17.1.9]
PGA2_c23860  nuoEF; NADH-quinone oxidoreductase subunits E/F [KO:K22515] [EC:1.17.1.9]
PGA2_c25650  fdhB; formate dehydrogenase iron-sulfur subunit [KO:K00124]
PGA2_c25640  putative formate dehydrogenase gamma subunit [KO:K00127]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
Reference
PMID:10978349 (EC5.3.1.22)
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
KO pathway
ko00630   

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