KEGG   PATHWAY: pin00020
Entry
pin00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Psychromonas ingrahamii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pin00020  Citrate cycle (TCA cycle)
pin00020

Module
pin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pin00020]
pin_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pin00020]
pin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pin00020]
pin_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pin00020]
pin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pin00020]
Other DBs
GO: 0006099
Organism
Psychromonas ingrahamii [GN:pin]
Gene
Ping_2257  citrate synthase [KO:K01647] [EC:2.3.3.1]
Ping_2617  citrate synthase [KO:K01647] [EC:2.3.3.1]
Ping_2120  aconitase [KO:K01681] [EC:4.2.1.3]
Ping_2899  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Ping_0983  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Ping_2252  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Ping_2251  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Ping_2779  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ping_3471  pyridine nucleotide-disulfide oxidoreductase dimerization region [KO:K00382] [EC:1.8.1.4]
Ping_2925  dihydrolipoamide dehydrogenase E3 component of 3 enzyme complexes [KO:K00382] [EC:1.8.1.4]
Ping_2249  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Ping_2250  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Ping_2254  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Ping_2253  sucA; succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Ping_2256  succinate dehydrogenase subunit C [KO:K00241]
Ping_2255  succinate dehydrogenase subunit D [KO:K00242]
Ping_3278  succinate dehydrogenase subunit A [KO:K00244] [EC:1.3.5.1]
Ping_3279  succinate dehydrogenase subunit B [KO:K00245] [EC:1.3.5.1]
Ping_3280  fumarate reductase, subunit C [KO:K00246]
Ping_3281  fumarate reductase, D subunit [KO:K00247]
Ping_1977  fumarase [KO:K01676] [EC:4.2.1.2]
Ping_1738  fumarase [KO:K01679] [EC:4.2.1.2]
Ping_0297  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Ping_0093  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Ping_2927  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Ping_3601  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
Ping_3602  pyruvate dehydrogenase complex, E1 beta2 component [KO:K00162] [EC:1.2.4.1]
Ping_3603  pyruvate dehydrogenase complex, E2 component dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Ping_2926  sucB; 2-oxoglutarate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component [KO:K00627] [EC:2.3.1.12]
Ping_2780  dihydrolipoamide dehydrogenase E3 component of 3 enzyme complexes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pin00010  Glycolysis / Gluconeogenesis
pin00061  Fatty acid biosynthesis
pin00071  Fatty acid degradation
pin00190  Oxidative phosphorylation
pin00220  Arginine biosynthesis
pin00250  Alanine, aspartate and glutamate metabolism
pin00280  Valine, leucine and isoleucine degradation
pin00350  Tyrosine metabolism
pin00470  D-Amino acid metabolism
pin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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