KEGG   PATHWAY: pmr00020
Entry
pmr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Proteus mirabilis HI4320
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmr00020  Citrate cycle (TCA cycle)
pmr00020

Module
pmr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmr00020]
pmr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmr00020]
pmr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmr00020]
pmr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmr00020]
pmr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmr00020]
Other DBs
GO: 0006099
Organism
Proteus mirabilis HI4320 [GN:pmr]
Gene
PMI0564  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
PMI1320  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
PMI2040  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PMI0891  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PMI0569  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PMI0570  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PMI2044  lpdA; dihydrolipoyl dehydrogenase (glycine cleavage system L protein) [KO:K00382] [EC:1.8.1.4]
PMI0572  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
PMI0571  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
PMI0567  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PMI0568  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
PMI0565  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
PMI0566  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
PMI3588  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
PMI3587  frdB; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
PMI3586  frdC; fumarate reductase subunit C [KO:K00246]
PMI3585  frdD; fumarate reductase subunit D [KO:K00247]
PMI1296  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
PMI3400  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PMI1931  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PMI3015  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
PMI2046  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PMI2045  aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmr00010  Glycolysis / Gluconeogenesis
pmr00053  Ascorbate and aldarate metabolism
pmr00061  Fatty acid biosynthesis
pmr00071  Fatty acid degradation
pmr00190  Oxidative phosphorylation
pmr00220  Arginine biosynthesis
pmr00250  Alanine, aspartate and glutamate metabolism
pmr00280  Valine, leucine and isoleucine degradation
pmr00350  Tyrosine metabolism
pmr00470  D-Amino acid metabolism
pmr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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