KEGG   PATHWAY: ptm00020
Entry
ptm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paramecium tetraurelia
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptm00020  Citrate cycle (TCA cycle)
ptm00020

Module
ptm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ptm00020]
ptm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ptm00020]
Other DBs
GO: 0006099
Organism
Paramecium tetraurelia [GN:ptm]
Gene
GSPATT00000266001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GSPATT00005849001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GSPATT00004963001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GSPATT00022347001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GSPATT00003286001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GSPATT00003586001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GSPATT00020115001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
PTMB.249  Citrate synthase, mitochondrial precursor [KO:K01647] [EC:2.3.3.1]
GSPATT00036672001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GSPATT00023720001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GSPATT00027462001  hypothetical protein [KO:K01681] [EC:4.2.1.3]
GSPATT00018656001  hypothetical protein [KO:K01681] [EC:4.2.1.3]
GSPATT00014300001  hypothetical protein [KO:K01681] [EC:4.2.1.3]
GSPATT00010809001  hypothetical protein [KO:K01681] [EC:4.2.1.3]
GSPATT00022820001  hypothetical protein [KO:K00031] [EC:1.1.1.42]
GSPATT00027349001  hypothetical protein [KO:K00031] [EC:1.1.1.42]
GSPATT00005218001  hypothetical protein [KO:K00031] [EC:1.1.1.42]
GSPATT00029781001  hypothetical protein [KO:K00031] [EC:1.1.1.42]
GSPATT00009194001  hypothetical protein [KO:K00031] [EC:1.1.1.42]
GSPATT00020509001  hypothetical protein [KO:K00031] [EC:1.1.1.42]
GSPATT00025896001  hypothetical protein [KO:K00030] [EC:1.1.1.41]
GSPATT00017313001  hypothetical protein [KO:K00030] [EC:1.1.1.41]
GSPATT00012691001  hypothetical protein [KO:K00030] [EC:1.1.1.41]
GSPATT00013309001  hypothetical protein [KO:K00030] [EC:1.1.1.41]
GSPATT00023050001  hypothetical protein [KO:K00030] [EC:1.1.1.41]
GSPATT00002118001  hypothetical protein [KO:K00164] [EC:1.2.4.2]
GSPATT00000464001  hypothetical protein [KO:K00164] [EC:1.2.4.2]
PTMB.81  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
GSPATT00006583001  hypothetical protein [KO:K00164] [EC:1.2.4.2]
GSPATT00022253001  hypothetical protein [KO:K00164] [EC:1.2.4.2]
GSPATT00020020001  hypothetical protein [KO:K00164] [EC:1.2.4.2]
GSPATT00003766001  hypothetical protein [KO:K00164] [EC:1.2.4.2]
GSPATT00019551001  hypothetical protein [KO:K00658] [EC:2.3.1.61]
GSPATT00010673001  hypothetical protein [KO:K00658] [EC:2.3.1.61]
GSPATT00025706001  hypothetical protein [KO:K00382] [EC:1.8.1.4]
GSPATT00023246001  hypothetical protein [KO:K00382] [EC:1.8.1.4]
GSPATT00004885001  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
GSPATT00001403001  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
GSPATT00003213001  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
GSPATT00002641001  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
GSPATT00014000001  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
GSPATT00027937001  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
GSPATT00031530001  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
GSPATT00001822001  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
GSPATT00009157001  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
GSPATT00017703001  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
GSPATT00025345001  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
GSPATT00000342001  hypothetical protein [KO:K00234] [EC:1.3.5.1]
PTMB.181  Succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
GSPATT00035998001  hypothetical protein [KO:K00234] [EC:1.3.5.1]
GSPATT00003663001  hypothetical protein [KO:K00234] [EC:1.3.5.1]
GSPATT00000787001  hypothetical protein [KO:K00234] [EC:1.3.5.1]
GSPATT00008605001  hypothetical protein [KO:K00234] [EC:1.3.5.1]
GSPATT00007995001  hypothetical protein [KO:K00234] [EC:1.3.5.1]
GSPATT00007994001  hypothetical protein [KO:K00234] [EC:1.3.5.1]
GSPATT00032079001  hypothetical protein [KO:K00235] [EC:1.3.5.1]
GSPATT00035128001  hypothetical protein [KO:K00235] [EC:1.3.5.1]
GSPATT00018337001  hypothetical protein [KO:K00235] [EC:1.3.5.1]
GSPATT00018791001  hypothetical protein [KO:K00235] [EC:1.3.5.1]
GSPATT00011064001  hypothetical protein [KO:K01679] [EC:4.2.1.2]
GSPATT00032410001  hypothetical protein [KO:K00025] [EC:1.1.1.37]
GSPATT00036328001  hypothetical protein [KO:K00025] [EC:1.1.1.37]
GSPATT00028542001  hypothetical protein [KO:K00025] [EC:1.1.1.37]
GSPATT00022468001  hypothetical protein [KO:K00025] [EC:1.1.1.37]
GSPATT00010909001  hypothetical protein [KO:K00025] [EC:1.1.1.37]
GSPATT00033909001  hypothetical protein [KO:K00025] [EC:1.1.1.37]
GSPATT00014396001  hypothetical protein [KO:K00026] [EC:1.1.1.37]
GSPATT00031820001  hypothetical protein [KO:K01610] [EC:4.1.1.49]
GSPATT00013074001  hypothetical protein [KO:K01610] [EC:4.1.1.49]
GSPATT00007321001  hypothetical protein [KO:K01610] [EC:4.1.1.49]
GSPATT00015873001  hypothetical protein [KO:K01610] [EC:4.1.1.49]
GSPATT00015084001  hypothetical protein [KO:K01610] [EC:4.1.1.49]
GSPATT00015362001  hypothetical protein [KO:K01610] [EC:4.1.1.49]
GSPATT00027885001  hypothetical protein [KO:K01610] [EC:4.1.1.49]
GSPATT00036529001  hypothetical protein [KO:K00161] [EC:1.2.4.1]
GSPATT00032874001  hypothetical protein [KO:K00162] [EC:1.2.4.1]
GSPATT00030398001  hypothetical protein [KO:K00162] [EC:1.2.4.1]
GSPATT00017277001  hypothetical protein [KO:K00162] [EC:1.2.4.1]
GSPATT00019432001  hypothetical protein [KO:K00162] [EC:1.2.4.1]
GSPATT00010271001  hypothetical protein [KO:K00162] [EC:1.2.4.1]
GSPATT00033463001  hypothetical protein [KO:K00162] [EC:1.2.4.1]
GSPATT00001431001  hypothetical protein [KO:K00627] [EC:2.3.1.12]
GSPATT00002613001  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ptm00010  Glycolysis / Gluconeogenesis
ptm00053  Ascorbate and aldarate metabolism
ptm00061  Fatty acid biosynthesis
ptm00062  Fatty acid elongation
ptm00071  Fatty acid degradation
ptm00190  Oxidative phosphorylation
ptm00220  Arginine biosynthesis
ptm00250  Alanine, aspartate and glutamate metabolism
ptm00280  Valine, leucine and isoleucine degradation
ptm00350  Tyrosine metabolism
ptm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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