KEGG   PATHWAY: rer03430
Entry
rer03430                    Pathway                                
Name
Mismatch repair - Rhodococcus erythropolis PR4
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
rer03430  Mismatch repair
rer03430

Other DBs
GO: 0006298
Organism
Rhodococcus erythropolis PR4 [GN:rer]
Gene
RER_22240  uvrD2; probable ATP-dependent DNA helicase UvrD2 [KO:K03657] [EC:5.6.2.4]
RER_44320  uvrD1; ATP-dependent DNA helicase UvrD1 [KO:K03657] [EC:5.6.2.4]
RER_22190  putative ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
RER_42360  xseA; putative exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
RER_42370  xseB; putative exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
RER_58300  ssb; single-stranded DNA-binding protein [KO:K03111]
RER_38370  putative single-stranded DNA-binding protein [KO:K03111]
RER_35310  dnaE; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
RER_00020  dnaN; DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
RER_03760  dnaX; DNA polymerase III gamma/tau subunit [KO:K02343] [EC:2.7.7.7]
RER_37690  holA; putative DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
RER_05140  holB; putative DNA polymerase III delta' subunit [KO:K02341] [EC:2.7.7.7]
RER_49910  putative exonuclease [KO:K02342] [EC:2.7.7.7]
RER_35910  dnaQ; putative DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
RER_23800  ligA; NAD(+)-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

DBGET integrated database retrieval system