KEGG   PATHWAY: ret03430
Entry
ret03430                    Pathway                                
Name
Mismatch repair - Rhizobium etli CFN 42
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ret03430  Mismatch repair
ret03430

Other DBs
GO: 0006298
Organism
Rhizobium etli CFN 42 [GN:ret]
Gene
RHE_CH00388  mutS; DNA mismatch repair protein [KO:K03555]
RHE_CH00848  mutL; DNA mismatch repair protein [KO:K03572]
RHE_CH02819  uvrD2; DNA helicase II protein [KO:K03657] [EC:5.6.2.4]
RHE_CH00573  uvrD1; ATP-dependent DNA helicase protein [KO:K03657] [EC:5.6.2.4]
RHE_CH00276  xseA; exodeoxyribonuclease VII large subunit protein [KO:K03601] [EC:3.1.11.6]
RHE_CH00916  probable exodeoxyribonuclease VII small subunit protein [KO:K03602] [EC:3.1.11.6]
RHE_CH01879  recJ; single-stranded-DNA-specific exonuclease protein [KO:K07462] [EC:3.1.-.-]
RHE_CH02108  ssb; single-strand DNA binding protein [KO:K03111]
RHE_CH04083  dnaEch2; DNA polymerase III alpha subunit protein [KO:K02337] [EC:2.7.7.7]
RHE_CH01627  dnaEch1; DNA polymerase III alpha subunit protein [KO:K02337] [EC:2.7.7.7]
RHE_CH00318  dnaN; DNA polymerase III, beta chain protein [KO:K02338] [EC:2.7.7.7]
RHE_CH00126  dnaX; DNA polymerase III, tau subunit protein [KO:K02343] [EC:2.7.7.7]
RHE_CH04118  putative DNA polymerase III, delta subunit protein [KO:K02340] [EC:2.7.7.7]
RHE_CH02159  holB; DNA polymerase III delta prime subunit protein [KO:K02341] [EC:2.7.7.7]
RHE_CH02833  probable DNA polymerase III, epsilon subunit protein [KO:K02342] [EC:2.7.7.7]
RHE_CH00005  dnaQ; DNA polymerase III, epsilon chain protein [KO:K02342] [EC:2.7.7.7]
RHE_PE00402  probable polymerase epsilon subunit protein [KO:K02342] [EC:2.7.7.7]
RHE_CH01457  putative DNA polymerase III, chi subunit protein [KO:K02339] [EC:2.7.7.7]
RHE_CH02835  ligA; DNA ligase (NAD+) protein [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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