KEGG   PATHWAY: sem00630Help
Entry
sem00630                    Pathway                                

Name
Glyoxylate and dicarboxylate metabolism - Salmonella enterica subsp. enterica serovar Typhimurium T000240
Class
Metabolism; Carbohydrate metabolism
BRITE hierarchy
Pathway map
sem00630  Glyoxylate and dicarboxylate metabolism
sem00630

Ortholog table
Module
sem_M00012  Glyoxylate cycle [PATH:sem00630]
Organism
Salmonella enterica subsp. enterica serovar Typhimurium T000240 [GN:sem]
Gene
STMDT12_C43170  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
STMDT12_C43160  malate synthase [KO:K01638] [EC:2.3.3.9]
STMDT12_C34170  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STMDT12_C07880  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
STMDT12_C17340  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
STMDT12_C01590  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.99 4.2.1.3]
STMDT12_C30690  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
STMDT12_C13350  katE; hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
STMDT12_C35370  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
STMDT12_C41510  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
STMDT12_C25750  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
STMDT12_C31060  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
STMDT12_C31080  gcvT; glycine cleavage system aminomethyltransferase T [KO:K00605] [EC:2.1.2.10]
STMDT12_C01550  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
STMDT12_C31070  glycine cleavage system protein H [KO:K02437]
STMDT12_C05820  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
STMDT12_C05830  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
STMDT12_C05840  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
STMDT12_C33050  garR; tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
STMDT12_C30120  glycerate kinase II [KO:K00865] [EC:2.7.1.165]
STMDT12_C05890  glycerate kinase II [KO:K00865] [EC:2.7.1.165]
STMDT12_C33040  glycerate kinase I [KO:K00865] [EC:2.7.1.165]
STMDT12_C11530  putative 2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.81 1.1.1.79]
STMDT12_C37030  2-ketogluconate reductase [KO:K00090] [EC:1.1.1.215 1.1.1.81 1.1.1.79]
STMDT12_C30250  L-1,2-propanediol oxidoreductase [KO:K00048] [EC:1.1.1.77]
STMDT12_C34130  L(+)-tartrate dehydratase subunit alpha [KO:K03779] [EC:4.2.1.32]
STMDT12_C34120  L(+)-tartrate dehydratase subunit beta [KO:K03780] [EC:4.2.1.32]
STMDT12_C19090  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.3.42 4.1.2.14]
STMDT12_C41820  formate dehydrogenase major subunit [KO:K00123] [EC:1.17.1.9]
STMDT12_C41810  formate dehydrogenase-O iron-sulfur subunit [KO:K00124]
STMDT12_C41800  formate dehydrogenase-O gamma subunit [KO:K00127]
STMDT12_C17780  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
Reference
PMID:10978349 (EC5.3.1.22)
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
KO pathway
ko00630   

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