KEGG   PATHWAY: tpe03030
Entry
tpe03030                    Pathway                                
Name
DNA replication - Thermofilum pendens
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
tpe03030  DNA replication
tpe03030

Organism
Thermofilum pendens [GN:tpe]
Gene
Tpen_0501  TOPRIM domain protein [KO:K02316] [EC:2.7.7.101]
Tpen_0899  RNase HII [KO:K03470] [EC:3.1.26.4]
Tpen_0393  replicative DNA polymerase I [KO:K02319] [EC:2.7.7.7]
Tpen_0298  replicative DNA polymerase I [KO:K02319] [EC:2.7.7.7]
Tpen_0497  replicative DNA helicase Mcm [KO:K10726] [EC:5.6.2.3]
Tpen_0622  DNA primase small subunit [KO:K02683] [EC:2.7.7.102]
Tpen_0623  DNA primase large subunit [KO:K18882]
Tpen_0624  monomeric archaeal DNA polymerase sliding clamp [KO:K04802]
Tpen_0267  replication factor C small subunit [KO:K04801]
Tpen_0266  replication factor C large subunit [KO:K04800]
Tpen_0302  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
Tpen_0426  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
Tpen_0750  DNA ligase I, ATP-dependent Dnl1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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