KEGG   PATHWAY: vcm00240Help
Entry
vcm00240                    Pathway                                

Name
Pyrimidine metabolism - Vibrio cholerae M66-2
Class
Metabolism; Nucleotide metabolism
BRITE hierarchy
Pathway map
vcm00240  Pyrimidine metabolism
vcm00240

Ortholog table
Module
vcm_M00051  Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP [PATH:vcm00240]
vcm_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:vcm00240]
Other DBs
BSID: 96040
GO: 0006220
Organism
Vibrio cholerae M66-2 [GN:vcm]
Gene
VCM66_2312  carB; carbamoyl-phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
VCM66_2313  carA; carbamoyl-phosphate synthase, small subunit [KO:K01956] [EC:6.3.5.5]
VCM66_2432  pyrB; aspartate carbamoyltransferase, catalytic subunit [KO:K00609] [EC:2.1.3.2]
VCM66_2433  pyrI; aspartate carbamoyltransferase, regulatory subunit [KO:K00610]
VCM66_A0885  pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
VCM66_1434  pyrD; dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
VCM66_0199  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
VCM66_1835  pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
VCM66_2181  pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
VCM66_0714  ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
VCM66_0605  pnp; polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
VCM66_2371  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
VCM66_1840  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
VCM66_2491  rpoA; DNA-directed RNA polymerase, alpha subunit [KO:K03040] [EC:2.7.7.6]
VCM66_0312  rpoB; DNA-directed RNA polymerase, beta subunit [KO:K03043] [EC:2.7.7.6]
VCM66_0313  rpoC; DNA-directed RNA polymerase, beta subunit [KO:K03046] [EC:2.7.7.6]
VCM66_2629  rpoZ; DNA-directed RNA polymerase, omega subunit [KO:K03060] [EC:2.7.7.6]
VCM66_0108  polI; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
VCM66_2168  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
VCM66_0013  dnaN; DNA polymerase III, beta chain [KO:K02338] [EC:2.7.7.7]
VCM66_1009  dnaZX; DNA polymerase III, gamma/tau subunits [KO:K02343] [EC:2.7.7.7]
VCM66_0909  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
VCM66_1939  holB; DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
VCM66_0284  putative DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
VCM66_1245  putative DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
VCM66_2156  dnaQ; DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
VCM66_2424  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
VCM66_0614  holD; DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
VCM66_0993  udk; uridine kinase [KO:K00876] [EC:2.7.1.48]
VCM66_A0504  putative 5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
VCM66_2097  ushA; UDP-sugar hydrolase [KO:K11751] [EC:3.6.1.45 3.1.3.5]
VCM66_0489  surE; survival protein SurE [KO:K03787] [EC:3.1.3.5]
VCM66_A0566  conserved hypothetical protein [KO:K08723] [EC:3.1.3.5]
VCM66_A0132  udp-2; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
VCM66_0989  udp-1; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
VCM66_2148  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
VCM66_A0930  conserved hypothetical protein [KO:K09913] [EC:2.4.2.2 2.4.2.1]
VCM66_0856  conserved hypothetical protein [KO:K06966] [EC:3.2.2.- 3.2.2.10]
VCM66_2373  mazG; mazG protein [KO:K04765] [EC:3.6.1.9]
VCM66_A0470  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
VCM66_1211  nrdA; ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
VCM66_1210  nrdB; ribonucleoside-diphosphate reductase, beta subunit [KO:K00526] [EC:1.17.4.1]
VCM66_0633  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
VCM66_1186  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
VCM66_2272  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
VCM66_A0050  deoD-2; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
VCM66_2270  deoD-1; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
VCM66_1902  conserved hypothetical protein [KO:K08722] [EC:3.1.3.89]
VCM66_A0799  putative deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
VCM66_1122  tdk; thymidine kinase [KO:K00857] [EC:2.7.1.21]
VCM66_1940  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
VCM66_2482  cpdB; 2,3-cyclic-nucleotide 2-phosphodiesterase [KO:K01119] [EC:3.1.3.6 3.1.4.16]
VCM66_2339  putative 2,3-cyclic-nucleotide 2-phosphodiesterase [KO:K01119] [EC:3.1.3.6 3.1.4.16]
Compound
C00015  UDP
C00029  UDP-glucose
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C21031  DNA 5-hydroxymethylcytosine
KO pathway
ko00240   

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