KEGG   PATHWAY: xcc00020
Entry
xcc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas campestris pv. campestris ATCC 33913
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xcc00020  Citrate cycle (TCA cycle)
xcc00020

Module
xcc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xcc00020]
xcc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xcc00020]
xcc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xcc00020]
xcc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xcc00020]
Other DBs
GO: 0006099
Organism
Xanthomonas campestris pv. campestris ATCC 33913 [GN:xcc]
Gene
XCC3235  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
XCC1860  rpfA; aconitase [KO:K01681] [EC:4.2.1.3]
XCC1863  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
XCC3782  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
XCC0967  icd; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
XCC1487  odhA; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
XCC1486  sucB; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
XCC0544  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
XCC1485  ldp; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
XCC3093  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
XCC3094  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
XCC3588  CoA tranferase [KO:K18118] [EC:2.8.3.18]
XCC2130  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
XCC2129  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
XCC2132  sdhC; succinate dehydrogenase membrane anchor subunit [KO:K00241]
XCC2131  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
XCC1416  fumB; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
XCC1494  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
XCC0928  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
XCC3625  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
XCC0542  phdB; dihydrolipoamide acetyltranferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xcc00010  Glycolysis / Gluconeogenesis
xcc00053  Ascorbate and aldarate metabolism
xcc00061  Fatty acid biosynthesis
xcc00071  Fatty acid degradation
xcc00190  Oxidative phosphorylation
xcc00220  Arginine biosynthesis
xcc00250  Alanine, aspartate and glutamate metabolism
xcc00280  Valine, leucine and isoleucine degradation
xcc00350  Tyrosine metabolism
xcc00470  D-Amino acid metabolism
xcc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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