KEGG   PATHWAY: cal00020
Entry
cal00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candida albicans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cal00020  Citrate cycle (TCA cycle)
cal00020

Module
cal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cal00020]
cal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cal00020]
cal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cal00020]
cal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cal00020]
cal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cal00020]
Other DBs
GO: 0006099
Organism
Candida albicans [GN:cal]
Gene
CAALFM_CR03500WA  CIT1; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CAALFM_CR08210CA  ACO1; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CAALFM_C205890CA  IDP1; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CAALFM_CR02360WA  IDP2; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CAALFM_C203080WA  IDH2; isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
CAALFM_C109630WA  IDH1; isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
CAALFM_C300880WA  KGD1; alpha-ketoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
CAALFM_CR07420WA  KGD2; alpha-ketoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
CAALFM_CR07400CA  LPD1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CAALFM_C101690CA  LSC1; succinate--CoA ligase (GDP-forming) subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CAALFM_CR06760CA  LSC2; succinate--CoA ligase (GDP-forming) subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CAALFM_C406610CA  SDH12; Sdh12p [KO:K00234] [EC:1.3.5.1]
CAALFM_C105260CA  SDH1; succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
CAALFM_CR05180CA  SDH2; succinate dehydrogenase iron-sulfur protein subunit [KO:K00235] [EC:1.3.5.1]
CAALFM_C201690WA  CaO19.1480; hypothetical protein [KO:K00236]
CAALFM_C505280CA  SDH4; Sdh4p [KO:K00237]
CAALFM_C103940WA  CaO19.4468; succinate dehydrogenase membrane anchor subunit [KO:K00237]
CAALFM_CR04530WA  FUM11; fumarase [KO:K01679] [EC:4.2.1.2]
CAALFM_C307640CA  FUM12; Fum12p [KO:K01679] [EC:4.2.1.2]
CAALFM_CR00540CA  MDH1; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CAALFM_C401900CA  MDH1-1; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CAALFM_C210480WA  MDH1-3; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CAALFM_C403940CA  PYC2; pyruvate carboxylase 2 [KO:K01958] [EC:6.4.1.1]
CAALFM_CR00200WA  PCK1; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CAALFM_C407110CA  PDA1; pyruvate dehydrogenase (acetyl-transferring) subunit E1 alpha [KO:K00161] [EC:1.2.4.1]
CAALFM_C404150CA  PDB1; pyruvate dehydrogenase (acetyl-transferring) subunit E1 beta [KO:K00162] [EC:1.2.4.1]
CAALFM_C701640WA  LAT1; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cal00010  Glycolysis / Gluconeogenesis
cal00053  Ascorbate and aldarate metabolism
cal00061  Fatty acid biosynthesis
cal00062  Fatty acid elongation
cal00071  Fatty acid degradation
cal00190  Oxidative phosphorylation
cal00220  Arginine biosynthesis
cal00250  Alanine, aspartate and glutamate metabolism
cal00280  Valine, leucine and isoleucine degradation
cal00350  Tyrosine metabolism
cal00470  D-Amino acid metabolism
cal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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