KEGG   PATHWAY: cal03008
Entry
cal03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Candida albicans
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
cal03008  Ribosome biogenesis in eukaryotes
cal03008

Organism
Candida albicans [GN:cal]
Gene
CAALFM_C200300CA  CKB1; casein kinase 2 regulatory subunit [KO:K03115]
CAALFM_C502760WA  CKB2; casein kinase 2 regulatory subunit [KO:K03115]
CAALFM_C204980CA  CKA2; casein kinase 2 catalytic subunit [KO:K03097] [EC:2.7.11.1]
CAALFM_CR10660WA  CKA1; casein kinase 2 catalytic subunit [KO:K03097] [EC:2.7.11.1]
CAALFM_C202450CA  UTP22; rRNA-processing protein [KO:K14544]
CAALFM_C202710CA  CaO19.5835; hypothetical protein [KO:K14545]
CAALFM_CR10240WA  UTP5; Utp5p [KO:K14546]
CAALFM_C300330WA  UTP8; Utp8p [KO:K14547]
CAALFM_C302130WA  UTP4; Utp4p [KO:K14548]
CAALFM_C208670CA  UTP15; snoRNA-binding rRNA-processing protein [KO:K14549]
CAALFM_C114080WA  CaO19.7215; snoRNA-binding rRNA-processing protein [KO:K14550]
CAALFM_C307750WA  UTP9; Utp9p [KO:K14551]
CAALFM_C403030CA  NAN1; Nan1p [KO:K14552]
CAALFM_C704190CA  UTP18; Utp18p [KO:K14553]
CAALFM_C202430WA  UTP21; rRNA-processing protein [KO:K14554]
CAALFM_C502550CA  UTP13; Utp13p [KO:K14555]
CAALFM_C108290CA  DIP2; snoRNA-binding rRNA-processing protein [KO:K14556]
CAALFM_C110880WA  CaO19.2330; snoRNA-binding rRNA-processing protein [KO:K14557]
CAALFM_CR00800CA  PWP2; snoRNA-binding rRNA-processing protein [KO:K14558]
CAALFM_C200070CA  MPP10; rRNA-processing protein [KO:K14559]
CAALFM_CR00460CA  CaO19.7488; snoRNA-binding rRNA-processing protein [KO:K14560]
CAALFM_CR07950WA  IMP4; snoRNA-binding rRNA-processing protein [KO:K14561]
CAALFM_C406720WA  NOP1; rRNA methyltransferase [KO:K14563] [EC:2.1.1.-]
CAALFM_CR09950CA  SIK1; snoRNP complex protein [KO:K14564]
CAALFM_C600370CA  NOP5; RNA-processing protein [KO:K14565]
CAALFM_C304380CA  CaO19.5885; RNA binding protein [KO:K12845]
CAALFM_C110620WA  CaO19.1833; pseudouridine synthase [KO:K11131] [EC:5.4.99.-]
CAALFM_CR04360CA  NHP2; snoRNA-binding protein [KO:K11129]
CAALFM_C111550WA  GAR1; H/ACA snoRNP pseudouridylase subunit [KO:K11128]
CAALFM_CR08020CA  NOP10; snoRNP complex protein [KO:K11130]
CAALFM_C503920CA  CaO19.3220; rRNA-processing protein [KO:K14566]
CAALFM_CR09800CA  CaO19.7552; hypothetical protein [KO:K14567]
CAALFM_C404830WA  DCR1; ribonuclease III [KO:K03685] [EC:3.1.26.3]
CAALFM_C111380WA  NEP1; 18S rRNA pseudouridine methyltransferase [KO:K14568] [EC:2.1.1.260]
CAALFM_C301000WA  BMS1; GTPase [KO:K14569]
CAALFM_CR04240CA  CaO19.512; ribosome biosynthesis protein [KO:K14521] [EC:2.3.1.-]
CAALFM_C207450CA  RCL1; rRNA-processing endoribonuclease [KO:K11108]
CAALFM_CR03200CA  CaO19.2404; ribonuclease P/MRP protein subunit [KO:K01164] [EC:3.1.26.5]
CAALFM_CR10690WA  POP3; Pop3p [KO:K14522] [EC:3.1.26.5]
CAALFM_C602910WA  POP4; RNase P/RNase MRP complex subunit [KO:K03538] [EC:3.1.26.5]
CAALFM_C302840WA  CaO19.275; RNA-binding protein [KO:K03537] [EC:3.1.26.5]
CAALFM_C400740WA  CaO19.4168; ribonuclease P/MRP protein subunit [KO:K14526] [EC:3.1.26.5]
CAALFM_C112480WA  hypothetical protein [KO:K14528] [EC:3.1.26.5]
CAALFM_C103800WA  RPP1; RNA-binding RNA processing protein [KO:K03539] [EC:3.1.26.5]
CAALFM_C501390CA  SNM1; Snm1p [KO:K14531]
CAALFM_C113360CA  RMP1; Rmp1p [KO:K14532]
CAALFM_C107090CA  CaO19.6195; hypothetical protein [KO:K14570] [EC:3.1.-.-]
CAALFM_C113200CA  REX3; RNA exonuclease [KO:K14570] [EC:3.1.-.-]
CAALFM_C201580WA  REX2; Rex2p [KO:K13288] [EC:3.1.-.-]
CAALFM_C113420CA  KEM1; chromatin-binding exonuclease [KO:K12618] [EC:3.1.13.-]
CAALFM_C401080WA  RAT1; ssRNA exonuclease [KO:K12619] [EC:3.1.13.-]
CAALFM_C306030WA  NOG1; putative GTPase [KO:K06943]
CAALFM_C603640WA  NOG2; putative GTPase [KO:K14537]
CAALFM_C406210CA  CaO19.2917; RNA-binding GTPase [KO:K14538]
CAALFM_C502120CA  RIX7; putative AAA family ATPase [KO:K14571]
CAALFM_C400970CA  MDN1; AAA family ATPase midasin [KO:K14572]
CAALFM_C104390CA  NOP4; mRNA-binding ribosome biosynthesis protein [KO:K14573]
CAALFM_C303650WA  HBR3; rRNA-binding endoribonuclease [KO:K11883]
CAALFM_C602340WA  HRR25; serine/threonine protein kinase [KO:K14758] [EC:2.7.11.1]
CAALFM_C206310CA  GSP1; Ran GTPase [KO:K07936]
CAALFM_CR00520CA  CRM1; exportin [KO:K14290]
CAALFM_CR06720WA  NMD3; ribosome-binding protein [KO:K07562]
CAALFM_CR04050CA  MEX67; Mex67p [KO:K14284]
CAALFM_C210640CA  MTR2; Mtr2p [KO:K14543]
CAALFM_CR07080WA  CaO19.1815; translation initiation factor 6 [KO:K03264]
CAALFM_C402880CA  CaO19.2708; guanine nucleotide exchange factor [KO:K14574]
CAALFM_C107140CA  RIA1; GTPase [KO:K14536] [EC:3.6.5.-]
CAALFM_C602230WA  CaO19.3463; putative GTPase [KO:K14539] [EC:3.6.1.-]
CAALFM_CR08590WA  CaO19.6432; AAA family ATPase [KO:K14575]
CAALFM_C100340WA  HBR1; nucleoside-triphosphatase [KO:K18532] [EC:2.7.4.3]
CAALFM_C110950CA  CaO19.2320; protein kinase [KO:K07178] [EC:2.7.11.1]
CAALFM_CR08100CA  RIO2; protein kinase [KO:K07179] [EC:2.7.11.1]
CAALFM_CR08770WA  RDN18; 18S ribosomal RNA [KO:K01979]
CAALFM_CR08790WA  RDN58; 5.8S ribosomal RNA [KO:K01986]
CAALFM_CR08810WA  RDN25; 25S ribosomal RNA [KO:K01982]
CAALFM_C304150WA  uncharacterized ncRNA [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
cal03010  Ribosome
KO pathway
ko03008   

DBGET integrated database retrieval system