KEGG   PATHWAY: egr00030
Entry
egr00030                    Pathway                                
Name
Pentose phosphate pathway - Eucalyptus grandis (rose gum)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
egr00030  Pentose phosphate pathway
egr00030

Module
egr_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:egr00030]
egr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:egr00030]
egr_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:egr00030]
egr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:egr00030]
Other DBs
GO: 0006098
Organism
Eucalyptus grandis (rose gum) [GN:egr]
Gene
104449168  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
104448748  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
104415659  glucose-6-phosphate 1-dehydrogenase, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
104456888  LOW QUALITY PROTEIN: inactive glucose-6-phosphate 1-dehydrogenase 4, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
104456597  glucose-6-phosphate 1-dehydrogenase, chloroplastic isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
104424650  glucose-6-phosphate 1-dehydrogenase, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
104419171  glucose-6-phosphate 1-dehydrogenase 6, cytoplasmic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
104437462  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104433369  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
104424538  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104453882  probable 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
104424233  LOW QUALITY PROTEIN: probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104443108  6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
104419470  6-phosphogluconate dehydrogenase, decarboxylating 1 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
104420003  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
104425987  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
104419149  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
104421781  transketolase-1, chloroplastic [KO:K00615] [EC:2.2.1.1]
104442251  LOW QUALITY PROTEIN: transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
104442252  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
104453564  transaldolase [KO:K00616] [EC:2.2.1.2]
104441884  transaldolase isoform X1 [KO:K00616] [EC:2.2.1.2]
104432508  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
104453734  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
104441239  probable ribose-5-phosphate isomerase 4, chloroplastic isoform X1 [KO:K01807] [EC:5.3.1.6]
104450056  ribokinase [KO:K00852] [EC:2.7.1.15]
104433225  phosphoglucomutase, cytoplasmic isoform X3 [KO:K01835] [EC:5.4.2.2]
104453687  phosphoglucomutase, cytoplasmic isoform X1 [KO:K01835] [EC:5.4.2.2]
104424364  phosphoglucomutase, chloroplastic isoform X1 [KO:K01835] [EC:5.4.2.2]
120296350  LOW QUALITY PROTEIN: phosphoglucomutase, cytoplasmic-like [KO:K01835] [EC:5.4.2.2]
104444513  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
104437556  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
104437139  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
104426677  gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
104456250  fructose-bisphosphate aldolase 8, cytosolic-like [KO:K01623] [EC:4.1.2.13]
104438376  LOW QUALITY PROTEIN: fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
104434011  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
104433167  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
104449094  fructose-bisphosphate aldolase, cytoplasmic isozyme 1 [KO:K01623] [EC:4.1.2.13]
104425668  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
104453379  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
104418880  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
120286975  fructose-bisphosphate aldolase 8, cytosolic-like [KO:K01623] [EC:4.1.2.13]
120286981  fructose-bisphosphate aldolase 5, cytosolic-like [KO:K01623] [EC:4.1.2.13]
120286985  fructose-bisphosphate aldolase 5, cytosolic-like [KO:K01623] [EC:4.1.2.13]
120286990  fructose-bisphosphate aldolase 6, cytosolic-like [KO:K01623] [EC:4.1.2.13]
120294513  fructose-bisphosphate aldolase 6, cytosolic-like [KO:K01623] [EC:4.1.2.13]
104433100  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
104433102  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
104449602  fructose-1,6-bisphosphatase, cytosolic isoform X1 [KO:K03841] [EC:3.1.3.11]
104419879  LOW QUALITY PROTEIN: fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
104449962  ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 [KO:K00850] [EC:2.7.1.11]
104437807  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
104436270  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
104436541  LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
104440310  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
104441179  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
104418330  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
104450354  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
104445673  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
104448966  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
104424735  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
egr00010  Glycolysis / Gluconeogenesis
egr00040  Pentose and glucuronate interconversions
egr00052  Galactose metabolism
egr00230  Purine metabolism
egr00240  Pyrimidine metabolism
egr00340  Histidine metabolism
egr00630  Glyoxylate and dicarboxylate metabolism
egr00750  Vitamin B6 metabolism
KO pathway
ko00030   

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