KEGG   PATHWAY: egr03030
Entry
egr03030                    Pathway                                
Name
DNA replication - Eucalyptus grandis (rose gum)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
egr03030  DNA replication
egr03030

Organism
Eucalyptus grandis (rose gum) [GN:egr]
Gene
104421330  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
104448335  DNA polymerase I A, chloroplastic/mitochondrial [KO:K02335] [EC:2.7.7.7]
104442349  replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
104438150  replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
104420611  replication protein A 70 kDa DNA-binding subunit B [KO:K07466]
104422418  proliferating cell nuclear antigen [KO:K04802]
104441316  DNA replication ATP-dependent helicase/nuclease JHS1 isoform X3 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
104426392  LOW QUALITY PROTEIN: flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
104434158  LOW QUALITY PROTEIN: flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
104426401  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
104435034  flap endonuclease 1 isoform X1 [KO:K04799] [EC:3.1.-.-]
104456906  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
104426474  flap endonuclease 1-like [KO:K04799] [EC:3.1.-.-]
104434754  flap endonuclease 1-like [KO:K04799] [EC:3.1.-.-]
120286196  flap endonuclease 1-like [KO:K04799] [EC:3.1.-.-]
104430191  flap endonuclease 1-like [KO:K04799] [EC:3.1.-.-]
104421226  DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
104457116  DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
104433642  DNA polymerase alpha subunit B [KO:K02321]
104443985  DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
104415662  LOW QUALITY PROTEIN: probable DNA primase large subunit [KO:K02685]
104418096  DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
104425494  DNA polymerase delta small subunit isoform X1 [KO:K02328]
104448554  uncharacterized protein LOC104448554 [KO:K03504]
104451548  uncharacterized protein LOC104451548 [KO:K03504]
104418231  LOW QUALITY PROTEIN: DNA polymerase delta subunit 4 [KO:K03505]
104434005  DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
104456397  LOW QUALITY PROTEIN: DNA polymerase epsilon subunit B [KO:K02325] [EC:2.7.7.7]
104421306  DNA polymerase epsilon subunit D [KO:K02326] [EC:2.7.7.7]
104433741  DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
104444824  DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
104453362  DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
104436127  DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
104440592  DNA replication licensing factor MCM6 isoform X1 [KO:K02542] [EC:5.6.2.3]
104456702  DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
108954355  DNA replication licensing factor MCM7-like [KO:K02210] [EC:5.6.2.3]
104437239  replication protein A 32 kDa subunit A [KO:K10739]
104437402  replication protein A 32 kDa subunit B [KO:K10739]
104425632  replication protein A 14 kDa subunit B [KO:K10740]
104421373  replication factor C subunit 1 [KO:K10754]
104450918  replication factor C subunit 2 [KO:K10755]
104441792  replication factor C subunit 2 [KO:K10755]
104443285  replication factor C subunit 3 isoform X2 [KO:K10756]
104417305  uncharacterized protein LOC104417305 [KO:K10756]
104450925  replication factor C subunit 3 [KO:K10756]
104454094  ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
104445822  ribonuclease H2 subunit B [KO:K10744]
104441251  uncharacterized protein C12B10.15c [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system