KEGG   PATHWAY: egr03430
Entry
egr03430                    Pathway                                
Name
Mismatch repair - Eucalyptus grandis (rose gum)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
egr03430  Mismatch repair
egr03430

Other DBs
GO: 0006298
Organism
Eucalyptus grandis (rose gum) [GN:egr]
Gene
104441022  endonuclease MutS2 [KO:K07456]
104421330  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
104426749  DNA mismatch repair protein PMS1 [KO:K10858]
104449833  DNA mismatch repair protein MLH1 [KO:K08734]
104438299  LOW QUALITY PROTEIN: DNA mismatch repair protein MSH7 [KO:K08737]
104426818  DNA mismatch repair protein MSH6 [KO:K08737]
104421462  DNA mismatch repair protein MSH2 [KO:K08735]
104424409  LOW QUALITY PROTEIN: DNA mismatch repair protein MSH3 [KO:K08736]
104422841  DNA mismatch repair protein MLH3 isoform X4 [KO:K08739]
104421373  replication factor C subunit 1 [KO:K10754]
104450918  replication factor C subunit 2 [KO:K10755]
104441792  replication factor C subunit 2 [KO:K10755]
104443285  replication factor C subunit 3 isoform X2 [KO:K10756]
104417305  uncharacterized protein LOC104417305 [KO:K10756]
104450925  replication factor C subunit 3 [KO:K10756]
104422418  proliferating cell nuclear antigen [KO:K04802]
104422068  exonuclease 1 isoform X1 [KO:K10746] [EC:3.1.-.-]
104440836  LOW QUALITY PROTEIN: exonuclease 1 [KO:K10746] [EC:3.1.-.-]
104442349  replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
104438150  replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
104420611  replication protein A 70 kDa DNA-binding subunit B [KO:K07466]
104437239  replication protein A 32 kDa subunit A [KO:K10739]
104437402  replication protein A 32 kDa subunit B [KO:K10739]
104425632  replication protein A 14 kDa subunit B [KO:K10740]
104418096  DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
104425494  DNA polymerase delta small subunit isoform X1 [KO:K02328]
104448554  uncharacterized protein LOC104448554 [KO:K03504]
104451548  uncharacterized protein LOC104451548 [KO:K03504]
104418231  LOW QUALITY PROTEIN: DNA polymerase delta subunit 4 [KO:K03505]
104421226  DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

DBGET integrated database retrieval system