KEGG   PATHWAY: egr04136
Entry
egr04136                    Pathway                                
Name
Autophagy - other - Eucalyptus grandis (rose gum)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
egr04136  Autophagy - other
egr04136

Other DBs
GO: 0006914
Organism
Eucalyptus grandis (rose gum) [GN:egr]
Gene
104425080  regulatory-associated protein of TOR 1 [KO:K07204]
104425090  regulatory-associated protein of TOR 1 [KO:K07204]
104419800  serine/threonine-protein kinase TOR [KO:K07203] [EC:2.7.11.1]
104419805  serine/threonine-protein kinase TOR isoform X1 [KO:K07203] [EC:2.7.11.1]
104445378  target of rapamycin complex subunit LST8 [KO:K08266]
104426428  LOW QUALITY PROTEIN: serine/threonine-protein kinase ATG1c [KO:K08269] [EC:2.7.11.1]
104434114  autophagy-related protein 13a [KO:K08331]
104415860  autophagy-related protein 13b [KO:K08331]
120287493  autophagy-related protein 13b-like [KO:K08331]
104457257  autophagy-related protein 101 [KO:K19730]
104436017  autophagy-related protein 11 [KO:K08330]
104437702  PP2A regulatory subunit TAP46 [KO:K17606]
104432941  serine/threonine-protein phosphatase PP2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
104433580  serine/threonine-protein phosphatase PP2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
104433787  serine/threonine-protein phosphatase PP2A-2 catalytic subunit [KO:K04382] [EC:3.1.3.16]
104422309  serine/threonine-protein phosphatase PP2A-2 catalytic subunit [KO:K04382] [EC:3.1.3.16]
104425519  serine/threonine-protein phosphatase PP2A-4 catalytic subunit [KO:K04382] [EC:3.1.3.16]
104427833  autophagy-related protein 9 isoform X1 [KO:K17907]
104418744  LOW QUALITY PROTEIN: autophagy-related protein 2 [KO:K17906]
104436009  autophagy-related protein 18b [KO:K17908]
104442175  beclin-1-like protein [KO:K08334]
104429739  LOW QUALITY PROTEIN: phosphatidylinositol 3-kinase, root isoform [KO:K00914] [EC:2.7.1.137]
104414192  phosphatidylinositol 3-kinase, root isoform [KO:K00914] [EC:2.7.1.137]
104431248  LOW QUALITY PROTEIN: phosphatidylinositol 3-kinase, root isoform-like [KO:K00914] [EC:2.7.1.137]
104438212  serine/threonine-protein kinase VPS15 [KO:K08333] [EC:2.7.11.1]
104450013  ubiquitin-like protein ATG12 [KO:K08336]
104422203  LOW QUALITY PROTEIN: autophagy protein 5 [KO:K08339]
104417315  autophagy-related protein 16 isoform X1 [KO:K17890]
104427568  ubiquitin-like modifier-activating enzyme atg7 [KO:K08337]
104425912  ubiquitin-like-conjugating enzyme ATG10 [KO:K17888]
104424355  autophagy-related protein 3 [KO:K08343]
104424637  autophagy-related protein 8i [KO:K08341]
104450246  autophagy-related protein 8C-like [KO:K08341]
104415287  autophagy-related protein 8h [KO:K08341]
104444408  autophagy-related protein 8f [KO:K08341]
104445703  autophagy-related protein 8B isoform X1 [KO:K08341]
104441406  autophagy-related protein 8C isoform X1 [KO:K08341]
104441898  autophagy-related protein 8f [KO:K08341]
104424758  autophagy-related protein 8A [KO:K08341]
104446319  autophagy-related protein 8f [KO:K08341]
104426486  LOW QUALITY PROTEIN: cysteine protease ATG4 [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   

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