KEGG   PATHWAY: ehi03008
Entry
ehi03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Entamoeba histolytica
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ehi03008  Ribosome biogenesis in eukaryotes
ehi03008

Organism
Entamoeba histolytica [GN:ehi]
Gene
EHI_075700  394.t00006; casein kinase II regulatory subunit family protein [KO:K03115]
EHI_030840  429.t00007; casein kinase II regulatory subunit family protein [KO:K03115]
EHI_035250  16.t00063; casein kinase II regulatory subunit family protein [KO:K03115]
EHI_152350  6.t00006; casein kinase II regulatory subunit family protein [KO:K03115]
EHI_006800  53.t00023; casein kinase [KO:K03097] [EC:2.7.11.1]
EHI_038670  7.t00025; protein kinase domain containing protein [KO:K03097] [EC:2.7.11.1]
EHI_127290  129.t00005; protein kinase domain containing protein [KO:K03097] [EC:2.7.11.1]
EHI_179100  15.t00009; hypothetical protein [KO:K14544]
EHI_054840  307.t00003; hypothetical protein [KO:K14546]
EHI_023870  484.t00001; WD domain containing protein [KO:K14548]
EHI_170100  19.t00035; WD domain containing protein [KO:K14549]
EHI_198890  39.t00016; hypothetical protein [KO:K14550]
EHI_069460  177.t00025; hypothetical protein [KO:K14552]
EHI_103620  85.t00004; WD domain containing protein [KO:K14553]
EHI_001960  90.t00020; WD domain containing protein [KO:K14554]
EHI_140750  60.t00003; WD domain containing protein [KO:K14555]
EHI_067830  8.t00062; WD domain containing protein [KO:K14556]
EHI_012960  14.t00016; hypothetical protein [KO:K14557]
EHI_151370  2.t00040; WD domain containing protein [KO:K14558]
EHI_142200  18.t00015; U3 small nucleolar ribonucleoprotein subunit [KO:K14559]
EHI_048860  U3 small nucleolar ribonucleo protein protein MPP10 [KO:K14559]
EHI_035170  16.t00056; U3 small nucleolar ribonucleoprotein subunit [KO:K14560]
EHI_146820  U3 small nucleolar ribonucleoprotein subunit [KO:K14560]
EHI_184000  178.t00005; U3 small nucleolar ribonucleoprotein subunit [KO:K14560]
EHI_004900  70.t00019; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
EHI_195100  hypothetical protein [KO:K14561]
EHI_118840  62.t00010; fibrillarin [KO:K14563] [EC:2.1.1.-]
EHI_122740  59.t00019; nucleolar protein Nop56 [KO:K14564]
EHI_183900  528.t00002; snoRNA binding protein [KO:K14565]
EHI_104600  415.t00007; 13 kDa ribonucleoprotein-associated protein [KO:K12845]
EHI_053440  59.t00026; 13 kDa ribonucleoprotein-associated protein [KO:K12845]
EHI_115300  254.t00012; centromere/microtubule binding protein cbf5 [KO:K11131] [EC:5.4.99.-]
EHI_102280  250.t00013; H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
EHI_001850  92.t00006; H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
EHI_194040  46.t00052; snoRNP protein gar1 [KO:K11128]
EHI_131470  41.t00030; ribosome biogenesis protein Nop10 [KO:K11130]
EHI_056460  202.t00010; hypothetical protein [KO:K14566]
EHI_138370  7.t00057; hypothetical protein [KO:K14567]
EHI_044610  3.t00130; ribosome biogenesis protein NEP1 [KO:K14568] [EC:2.1.1.260]
EHI_196410  299.t00008; Ribosome biogenesis protein BMS1 [KO:K14569]
EHI_033750  387.t00002; hypothetical protein [KO:K14521] [EC:2.3.1.-]
EHI_115370  254.t00004; RNA 3'-terminal phosphate cyclase [KO:K11108]
EHI_127090  159.t00020; hypothetical protein [KO:K01164] [EC:3.1.26.5]
EHI_021330  10.t00012; hypothetical protein [KO:K03538] [EC:3.1.26.5]
EHI_135440  hypothetical protein [KO:K03537] [EC:3.1.26.5]
EHI_086240  94.t00035; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
EHI_179350  188.t00013; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
EHI_128220  5'-3' exonuclease domain containing protein [KO:K12619] [EC:3.1.13.-]
EHI_132400  297.t00006; 5'-3' exonuclease domain containing protein [KO:K12619] [EC:3.1.13.-]
EHI_133330  5.t00013; 5'-3' exonuclease domain containing protein [KO:K12619] [EC:3.1.13.-]
EHI_080270  293.t00010; 5'-3' exonuclease domain containing protein [KO:K12619] [EC:3.1.13.-]
EHI_093360  22.t00005; 5'-3' exonuclease domain containing protein [KO:K12619] [EC:3.1.13.-]
EHI_174940  86.t00036; nucleolar GTP-binding protein 1 [KO:K06943]
EHI_164370  408.t00006; GTPase [KO:K14537]
EHI_091060  211.t00004; ATPase, AAA family protein [KO:K14571]
EHI_004190  238.t00004; Nuclear valosin-containing protein [KO:K14571]
EHI_153780  45.t00019; hypothetical protein [KO:K14572]
EHI_092500  26.t00027; RNA recognition motif domain containing protein [KO:K14573]
EHI_008190  55.t00031; RNA recognition motif domain containing protein [KO:K14573]
EHI_087710  88.t00030; hypothetical protein [KO:K11883]
EHI_148190  1.t00138; Ran family GTPase [KO:K07936]
EHI_104460  38.t00026; nonsense-mediated mRNA decay protein [KO:K07562]
EHI_083120  578.t00005; Nonsense-mediated mRNA decay protein 3 [KO:K07562]
EHI_080900  251.t00008; hypothetical protein [KO:K14284]
EHI_035490  17.t00035; hypothetical protein [KO:K14284]
EHI_182830  28.t00012; hypothetical protein [KO:K14284]
EHI_044880  3.t00008; nuclear transport factor 2-like export factor 2 [KO:K14285]
EHI_006170  83.t00030; eukaryotic translation initiation factor 6 [KO:K03264]
EHI_179200  188.t00006; hypothetical protein [KO:K14574]
EHI_155660  23.t00018; Elongation factor 2 [KO:K14536] [EC:3.6.5.-]
EHI_118800  62.t00014; hypothetical protein [KO:K14539] [EC:3.6.1.-]
EHI_001120  264.t00008; hypothetical protein [KO:K18532] [EC:2.7.4.3]
EHI_050990  183.t00019; RIO1 family protein [KO:K07178] [EC:2.7.11.1]
EHI_170330  186.t00021; RIO1 family protein [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ehi03010  Ribosome
KO pathway
ko03008   

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