KEGG   PATHWAY: ehi03030
Entry
ehi03030                    Pathway                                
Name
DNA replication - Entamoeba histolytica
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
ehi03030  DNA replication
ehi03030

Organism
Entamoeba histolytica [GN:ehi]
Gene
EHI_006690  53.t00034; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
EHI_010140  4.t00129; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
EHI_024480  189.t00014; hypothetical protein [KO:K10744]
EHI_042240  11.t00009; ribonuclease [KO:K03469] [EC:3.1.26.4]
EHI_062980  234.t00004; replication factor A protein 1 [KO:K07466]
EHI_069980  393.t00005; DNA replication licensing factor [KO:K02209] [EC:5.6.2.3]
EHI_081730  318.t00007; activator 1 subunit [KO:K10756]
EHI_084700  36.t00028; RNase HI large subunit [KO:K10743] [EC:3.1.26.4]
EHI_086540  180.t00016; Activator 1 40 kDa subunit [KO:K10755]
EHI_099740  173.t00009; FEN-1 nuclease [KO:K04799] [EC:3.1.-.-]
EHI_099850  173.t00021; replication factor C familiy protein [KO:K10756]
EHI_103530  300.t00001; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
EHI_103600  85.t00006; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
EHI_111060  1.t00017; DNA ligase [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
EHI_117970  18.t00056; DNA replication licensing factor [KO:K02540] [EC:5.6.2.3]
EHI_118870  62.t00007; DNA replication licensing factor [KO:K02542] [EC:5.6.2.3]
EHI_128450  161.t00010; proliferating cell nuclear antigen [KO:K04802]
EHI_134360  [KO:K10743] [EC:3.1.26.4]
EHI_141410  [KO:K02328]
EHI_147000  276.t00004; hypothetical protein [KO:K10739]
EHI_147530  51.t00007; DNA primase large subunit [KO:K02685]
EHI_151520  2.t00064; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
EHI_158110  198.t00011; DNA replication licensing factor [KO:K02210] [EC:5.6.2.3]
EHI_158610  277.t00004; Activator 1 140 kDa subunit [KO:K10754]
EHI_167150  44.t00003; Replication factor C subunit 4 [KO:K10755]
EHI_175240  73.t00009; activator 1 subunit [KO:K10756]
EHI_187720  345.t00011; DNA replication licensing factor [KO:K02212] [EC:5.6.2.3]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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