KEGG   PATHWAY: emu03030
Entry
emu03030                    Pathway                                
Name
DNA replication - Enterococcus mundtii
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
emu03030  DNA replication
emu03030

Organism
Enterococcus mundtii [GN:emu]
Gene
EMQU_2116  exonuclease [KO:K02342] [EC:2.7.7.7]
EMQU_1002  dnaE; DNA-directed DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
EMQU_1678  polC; DNA-directed DNA polymerase III subunit alpha [KO:K03763] [EC:2.7.7.7]
EMQU_0724  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
EMQU_0729  holB; DNA-directed DNA polymerase III delta' subunit [KO:K02341] [EC:2.7.7.7]
EMQU_1201  holA; DNA-directed DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
EMQU_0002  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
EMQU_0012  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
EMQU_1063  DNA primase [KO:K02316] [EC:2.7.7.101]
EMQU_0008  single-strand binding protein [KO:K03111]
EMQU_3080  single-strand DNA binding protein [KO:K03111]
EMQU_3032  ssb-6; single-strand binding protein [KO:K03111]
EMQU_3147  single-strand DNA binding protein [KO:K03111]
EMQU_1321  hypothetical protein [KO:K03469] [EC:3.1.26.4]
EMQU_1107  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
EMQU_2047  ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
EMQU_1551  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
EMQU_1606  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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