KEGG   PATHWAY: ldo00020
Entry
ldo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leishmania donovani
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ldo00020  Citrate cycle (TCA cycle)
ldo00020

Module
ldo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ldo00020]
ldo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ldo00020]
ldo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ldo00020]
Other DBs
GO: 0006099
Organism
Leishmania donovani [GN:ldo]
Gene
LDBPK_180700  citrate synthase, putative [KO:K01647] [EC:2.3.3.1]
LDBPK_180510  aconitase, putative [KO:K01681] [EC:4.2.1.3]
LDBPK_100310  isocitrate dehydrogenase [NADP], mitochondrial precursor, putative [KO:K00031] [EC:1.1.1.42]
LDBPK_332680  isocitrate dehydrogenase, putative [KO:K00031] [EC:1.1.1.42]
LDBPK_270740  2-oxoglutarate dehydrogenase subunit, putative [KO:K00164] [EC:1.2.4.2]
LDBPK_363630  2-oxoglutarate dehydrogenase E1 component, putative [KO:K00164] [EC:1.2.4.2]
LDBPK_282600  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase, putative [KO:K00658] [EC:2.3.1.61]
LDBPK_323510  dihydrolipoamide dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
LDBPK_312710  2-oxoglutarate dehydrogenase, E3 component, lipoamidedehydrogenase-like protein [KO:K00382] [EC:1.8.1.4]
LDBPK_312720  acetoin dehydrogenase E3 component-like protein [KO:K00382] [EC:1.8.1.4]
LDBPK_291950  dihydrolipoamide dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
LDBPK_252220  succinyl-CoA synthetase alpha subunit, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LDBPK_363100  succinyl-CoA ligase [GDP-forming] beta-chain, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LDBPK_241700  succinate dehydrogenase flavoprotein, putative [KO:K00234] [EC:1.3.5.1]
LDBPK_292080  fumarate hydratase, putative [KO:K01676] [EC:4.2.1.2]
LDBPK_240310  fumarate hydratase, putative [KO:K01676] [EC:4.2.1.2]
LDBPK_283090  cytosolic malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
LDBPK_340140  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
LDBPK_340150  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LDBPK_340160  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
LDBPK_340170  mitochondrial malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LDBPK_190710  glycosomal malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LDBPK_072500  hypothetical protein [KO:K01610] [EC:4.1.1.49]
LDBPK_181360  pyruvate dehydrogenase E1 component alpha subunit, putative [KO:K00161] [EC:1.2.4.1]
LDBPK_251790  pyruvate dehydrogenase E1 beta subunit, putative [KO:K00162] [EC:1.2.4.1]
LDBPK_210610  dihydrolipoamide acetyltransferase precursorlike protein [KO:K00627] [EC:2.3.1.12]
LDBPK_362790  dihydrolipoamide acetyltransferase precursor, putative [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ldo00010  Glycolysis / Gluconeogenesis
ldo00053  Ascorbate and aldarate metabolism
ldo00061  Fatty acid biosynthesis
ldo00062  Fatty acid elongation
ldo00071  Fatty acid degradation
ldo00190  Oxidative phosphorylation
ldo00220  Arginine biosynthesis
ldo00250  Alanine, aspartate and glutamate metabolism
ldo00280  Valine, leucine and isoleucine degradation
ldo00350  Tyrosine metabolism
ldo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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