KEGG   PATHWAY: lif00020
Entry
lif00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leishmania infantum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lif00020  Citrate cycle (TCA cycle)
lif00020

Module
lif_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lif00020]
lif_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lif00020]
lif_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lif00020]
Other DBs
GO: 0006099
Organism
Leishmania infantum [GN:lif]
Gene
LINJ_18_0690  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
LINJ_18_0700  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
LINJ_18_0510  putative aconitase [KO:K01681] [EC:4.2.1.3]
LINJ_33_2680  putative isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LINJ_10_0310  putative isocitrate dehydrogenase [NADP], mitochondrial precursor [KO:K00031] [EC:1.1.1.42]
LINJ_27_0740  putative 2-oxoglutarate dehydrogenase subunit [KO:K00164] [EC:1.2.4.2]
LINJ_36_3630  putative 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LINJ_28_2600  putative 2-oxoglutarate dehydrogenase, E2 component,dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
LINJ_32_3510  GCVL-2; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LINJ_31_2710  2-oxoglutarate dehydrogenase, E3 component,lipoamidedehydrogenase-like protein [KO:K00382] [EC:1.8.1.4]
LINJ_31_2720  acetoin dehydrogenase E3 component-like protein [KO:K00382] [EC:1.8.1.4]
LINJ_29_1950  GCVL-1; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LINJ_25_2220  putative succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LINJ_25_2230  putative succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LINJ_36_3100  putative succinyl-CoA ligase [GDP-forming] beta-chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LINJ_24_1700  putative succinate dehydrogenase flavoprotein [KO:K00234] [EC:1.3.5.1]
LINJ_29_2080  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LINJ_24_0310  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LINJ_28_3090  cMDH; cytosolic malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
LINJ_19_0710  glycosomal malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LINJ_34_0140  putative malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LINJ_34_0150  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LINJ_34_0160  putative malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LINJ_34_0170  mMDH; mitochondrial malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LINJ_27_1710  putative glycosomal phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LINJ_18_1360  putative pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
LINJ_25_1790  putative pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
LINJ_36_2790  putative dihydrolipoamide acetyltransferase precursor [KO:K00627] [EC:2.3.1.12]
LINJ_21_0610  dihydrolipoamide acetyltransferase precursorlike protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lif00010  Glycolysis / Gluconeogenesis
lif00053  Ascorbate and aldarate metabolism
lif00061  Fatty acid biosynthesis
lif00062  Fatty acid elongation
lif00071  Fatty acid degradation
lif00190  Oxidative phosphorylation
lif00220  Arginine biosynthesis
lif00250  Alanine, aspartate and glutamate metabolism
lif00280  Valine, leucine and isoleucine degradation
lif00350  Tyrosine metabolism
lif00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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