KEGG   PATHWAY: lma03008
Entry
lma03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Leishmania major
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
lma03008  Ribosome biogenesis in eukaryotes
lma03008

Organism
Leishmania major [GN:lma]
Gene
LMJF_36_5090  putative protein kinase ck2 regulatory subunit [KO:K03115]
LMJF_02_0360  putative casein kinase II, alpha chain [KO:K03097] [EC:2.7.11.1]
LMJF_35_1730  putative casein kinase II [KO:K03097] [EC:2.7.11.1]
LMJF_23_0030  putative beta propeller protein [KO:K14549]
LMJF_28_0470  hypothetical protein [KO:K14552]
LMJF_36_4210  hypothetical protein [KO:K14554]
LMJF_25_0430  hypothetical protein [KO:K14555]
LMJF_14_0570  hypothetical protein [KO:K14556]
LMJF_18_0830  periodic tryptophan protein 2-like protein [KO:K14558]
LMJF_29_0750  putative U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
LMJF_32_0690  hypothetical protein [KO:K14560]
LMJF_30_1290  putative U3 small nuclear ribonucleoprotein (snRNP) [KO:K14561]
LMJF_19_0100  putative fibrillarin [KO:K14563] [EC:2.1.1.-]
LMJF_36_3070  fibrillarin [KO:K14563] [EC:2.1.1.-]
LMJF_10_0210  putative nucleolar protein [KO:K14564]
LMJF_15_1380  putative nucleolar RNA binding protein [KO:K14565]
LMJF_15_1470  putative ribosomal protein S6 [KO:K12845]
LMJF_21_1760  putative centromere/microtubule binding protein cbf5 [KO:K11131] [EC:5.4.99.-]
LMJF_34_3980  nucleolar protein family a member-like protein [KO:K11129]
LMJF_34_4290  putative nucleolar protein family A [KO:K11128]
LMJF_36_0340  putative nuclear protein family a (nop10p) [KO:K11130]
LMJF_19_1210  hypothetical protein [KO:K14566]
LMJF_32_0150  hypothetical protein [KO:K14567]
LMJF_16_1390  hypothetical protein [KO:K14568] [EC:2.1.1.260]
LMJF_27_2250  hypothetical protein [KO:K14568] [EC:2.1.1.260]
LMJF_28_1880  hypothetical protein [KO:K14569]
LMJF_17_1250  hypothetical protein [KO:K14521] [EC:2.3.1.-]
LMJF_35_1700  putative RNA 3'-terminal phosphate cyclase [KO:K11108]
LMJF_06_0260  putative 5'-3' exonuclease [KO:K12618] [EC:3.1.13.-]
LMJF_36_1790  putative exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
LMJF_23_0543  putative 5'-3' exonuclease XRNC [KO:K12619] [EC:3.1.13.-]
LMJF_33_1870  putative nucleolar GTP-binding protein [KO:K06943]
LMJF_05_0460  putative GTPase [KO:K14537]
LMJF_27_1050  putative vesicular transport protein (CDC48 homologue) [KO:K14571]
LMJF_20_0260  hypothetical protein [KO:K14572]
LMJF_32_2810  putative RNA-binding protein [KO:K14573]
LMJF_36_5060  hypothetical protein [KO:K11883]
LMJF_25_1420  putative GTP-binding protein [KO:K07936]
LMJF_32_1100  putative exportin 1 [KO:K14290]
LMJF_26_0970  hypothetical protein [KO:K07562]
LMJF_27_1690  hypothetical protein [KO:K14284]
LMJF_06_1170  putative nuclear transport factor 2 protein (NFT2) [KO:K14285]
LMJF_36_0890  putative eukaryotic translation initiation factor 6 (eIF-6) [KO:K03264]
LMJF_34_1110  hypothetical protein [KO:K14574]
LMJF_05_0200  hypothetical protein [KO:K14539] [EC:3.6.1.-]
LMJF_30_1890  hypothetical protein [KO:K18532] [EC:2.7.4.3]
LMJF_29_0240  hypothetical protein [KO:K07178] [EC:2.7.11.1]
LMJF_30_1360  hypothetical protein [KO:K07179] [EC:2.7.11.1]
LMJF27_rRNA_01  18S ribosomal RNA (SSU) RNA [KO:K01979]
LMJF27_rRNA_03  18S ribosomal RNA (SSU) RNA [KO:K01979]
LMJF27_rRNA_05  18S ribosomal RNA (SSU) RNA [KO:K01979]
LMJF27_rRNA_04  18S ribosomal RNA (SSU) RNA [KO:K01979]
LMJF27_rRNA_06  18S ribosomal RNA (SSU) RNA [KO:K01979]
LMJF27_rRNA_02  18S ribosomal RNA (SSU) RNA [KO:K01979]
LMJF27_rRNA_07  5.8S ribosomal RNA (M3) RNA [KO:K01986]
LMJF27_rRNA_11  5.8S ribosomal RNA (M3) RNA [KO:K01986]
LMJF27_rRNA_08  5.8S ribosomal RNA (M3) RNA [KO:K01986]
LMJF27_rRNA_12  5.8S ribosomal RNA (M3) RNA [KO:K01986]
LMJF27_rRNA_09  5.8S ribosomal RNA (M3) RNA [KO:K01986]
LMJF27_rRNA_10  5.8S ribosomal RNA (M3) RNA [KO:K01986]
LMJF11_5SRRNA_01  5S(M5) ribosomal RNA [KO:K01981]
LMJF21_5SrRNA_01  term=5S ribosomal RNA (M5) [KO:K01981]
LMJF21_5SrRNA_02  term=5S(M5) ribosomal RNA [KO:K01981]
LMJF15_5SrRNA_01  5S(M5) ribosomal RNA [KO:K01981]
LMJF11_5SRRNA_02  5S(M5) ribosomal RNA [KO:K01981]
LMJF23_5SrRNA_01  5S(MS) ribosomal RNA [KO:K01981]
LMJF09_5SrRNA_03  5S(M5) ribosomal RNA [KO:K01981]
LMJF09_5SrRNA_01  5S(M5) ribosomal RNA [KO:K01981]
LMJF05_5SrRNA_01  5S(M5) ribosomal RNA [KO:K01981]
LMJF09_5SrRNA_02  5S(M5) ribosomal RNA [KO:K01981]
LMJF11_5SRRNA_03  5S(M5) ribosomal RNA [KO:K01981]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
lma03010  Ribosome
KO pathway
ko03008   

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