KEGG   PATHWAY: lme03030
Entry
lme03030                    Pathway                                
Name
DNA replication - Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
lme03030  DNA replication
lme03030

Organism
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [GN:lme]
Gene
LEUM_1529  DNA polymerase III, epsilon subunit related 3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LEUM_0774  DNA polymerase III catalytic subunit, DnaE type [KO:K02337] [EC:2.7.7.7]
LEUM_0689  DNA polymerase III catalytic subunit, PolC type [KO:K03763] [EC:2.7.7.7]
LEUM_0276  DNA polymerase III, gamma/tau subunit [KO:K02343] [EC:2.7.7.7]
LEUM_0281  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
LEUM_1587  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
LEUM_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
LEUM_1965  primary replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
LEUM_1056  Single-stranded DNA-binding protein [KO:K03111]
LEUM_1969  single-strand binding protein [KO:K03111]
LEUM_1264  Single-stranded DNA-binding protein [KO:K03111]
LEUM_1016  Ribonuclease HI [KO:K03469] [EC:3.1.26.4]
LEUM_1375  RNase HI [KO:K03469] [EC:3.1.26.4]
LEUM_0765  RNase HII [KO:K03470] [EC:3.1.26.4]
LEUM_1721  Ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
LEUM_0713  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
LEUM_0568  NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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