KEGG   PATHWAY: loa00020
Entry
loa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Loa loa (eye worm)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
loa00020  Citrate cycle (TCA cycle)
loa00020

Module
loa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:loa00020]
loa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:loa00020]
loa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:loa00020]
loa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:loa00020]
loa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:loa00020]
Other DBs
GO: 0006099
Organism
Loa loa (eye worm) [GN:loa]
Gene
LOAG_03295  citrate synthase [KO:K01647] [EC:2.3.3.1]
LOAG_00507  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
LOAG_16768  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LOAG_16803  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LOAG_02269  isocitrate dehydrogenase gamma subunit [KO:K00030] [EC:1.1.1.41]
LOAG_06771  isocitrate dehydrogenase subunit alpha [KO:K00030] [EC:1.1.1.41]
LOAG_17315  dehydrogenase [KO:K00030] [EC:1.1.1.41]
LOAG_02520  oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
LOAG_04620  hypothetical protein [KO:K00658] [EC:2.3.1.61]
LOAG_18466  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LOAG_18081  succinyl-CoA ligase alpha-chain [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LOAG_17925  succinyl-CoA synthetase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LOAG_18724  succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
LOAG_18725  succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
LOAG_10155  succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
LOAG_02826  hypothetical protein [KO:K00236]
LOAG_00689  succinate dehydrogenase [KO:K00237]
LOAG_03614  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LOAG_10359  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
LOAG_02046  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LOAG_07217  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
LOAG_10229  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
LOAG_01890  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
LOAG_04006  pyruvate dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
LOAG_04007  pyruvate dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
LOAG_01333  hypothetical protein [KO:K00162] [EC:1.2.4.1]
LOAG_13880  hypothetical protein [KO:K00162] [EC:1.2.4.1]
LOAG_10883  dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
loa00010  Glycolysis / Gluconeogenesis
loa00053  Ascorbate and aldarate metabolism
loa00061  Fatty acid biosynthesis
loa00062  Fatty acid elongation
loa00071  Fatty acid degradation
loa00190  Oxidative phosphorylation
loa00220  Arginine biosynthesis
loa00250  Alanine, aspartate and glutamate metabolism
loa00280  Valine, leucine and isoleucine degradation
loa00350  Tyrosine metabolism
loa00470  D-Amino acid metabolism
loa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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