KEGG   PATHWAY: pbe00020
Entry
pbe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Plasmodium berghei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pbe00020  Citrate cycle (TCA cycle)
pbe00020

Module
pbe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pbe00020]
pbe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pbe00020]
Other DBs
GO: 0006099
Organism
Plasmodium berghei [GN:pbe]
Gene
PBANKA_0506700  citrate synthase, mitochondrial, putative [KO:K01647] [EC:2.3.3.1]
PBANKA_1355200  aconitate hydratase, putative [KO:K01681] [EC:4.2.1.3]
PBANKA_1358600  isocitrate dehydrogenase [NADP], mitochondrial, putative [KO:K00031] [EC:1.1.1.42]
PBANKA_0710100  2-oxoglutarate dehydrogenase E1 component, putative [KO:K00164] [EC:1.2.4.2]
PBANKA_1419100  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, putative [KO:K00658] [EC:2.3.1.61]
PBANKA_0714900  dihydrolipoyl dehydrogenase, apicoplast, putative [KO:K00382] [EC:1.8.1.4]
PBANKA_1446900  dihydrolipoyl dehydrogenase, mitochondrial, putative [KO:K00382] [EC:1.8.1.4]
PBANKA_0938500  succinyl-CoA synthetase alpha subunit, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
PBANKA_1013200  succinyl-CoA ligase [ADP-forming] subunit beta, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
PBANKA_0518200  flavoprotein subunit of succinate dehydrogenase, putative [KO:K00234] [EC:1.3.5.1]
PBANKA_1428800  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial, putative [KO:K00235] [EC:1.3.5.1]
PBANKA_0828100  fumarate hydratase, putative [KO:K01676] [EC:4.2.1.2]
PBANKA_1116300  malate:quinone oxidoreductase, putative [KO:K00116] [EC:1.1.5.4]
PBANKA_1355900  phosphoenolpyruvate carboxykinase, putative [KO:K01610] [EC:4.1.1.49]
PBANKA_0923800  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PBANKA_1310100  pyruvate dehydrogenase E1 component subunit beta, putative [KO:K00162] [EC:1.2.4.1]
PBANKA_0505000  dihydrolipoamide acyltransferase, putative [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pbe00010  Glycolysis / Gluconeogenesis
pbe00061  Fatty acid biosynthesis
pbe00062  Fatty acid elongation
pbe00071  Fatty acid degradation
pbe00190  Oxidative phosphorylation
pbe00220  Arginine biosynthesis
pbe00250  Alanine, aspartate and glutamate metabolism
pbe00280  Valine, leucine and isoleucine degradation
pbe00350  Tyrosine metabolism
pbe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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