KEGG   PATHWAY: pkn00020
Entry
pkn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Plasmodium knowlesi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pkn00020  Citrate cycle (TCA cycle)
pkn00020

Module
pkn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pkn00020]
pkn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pkn00020]
Other DBs
GO: 0006099
Organism
Plasmodium knowlesi [GN:pkn]
Gene
PKNH_0606800  citrate synthase, mitochondrial, putative [KO:K01647] [EC:2.3.3.1]
PKNH_1259300  aconitate hydratase, putative [KO:K01681] [EC:4.2.1.3]
PKNH_1255600  isocitrate dehydrogenase [NADP], mitochondrial, putative [KO:K00031] [EC:1.1.1.42]
PKNH_1314700  2-oxoglutarate dehydrogenase E1 component, putative [KO:K00164] [EC:1.2.4.2]
PKNH_1421400  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, putative [KO:K00658] [EC:2.3.1.61]
PKNH_0504500  dihydrolipoyl dehydrogenase, apicoplast, putative [KO:K00382] [EC:1.8.1.4]
PKNH_1451700  dihydrolipoyl dehydrogenase, mitochondrial, putative [KO:K00382] [EC:1.8.1.4]
PKNH_0906100  succinyl-CoA synthetase alpha subunit, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
PKNH_1327100  succinyl-CoA ligase [ADP-forming] subunit beta, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
PKNH_0619600  flavoprotein subunit of succinate dehydrogenase, putative [KO:K00234] [EC:1.3.5.1]
PKNH_1432200  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial, putative [KO:K00235] [EC:1.3.5.1]
PKNH_0725600  fumarate hydratase, putative [KO:K01676] [EC:4.2.1.2]
PKNH_1133200  malate:quinone oxidoreductase, putative [KO:K00116] [EC:1.1.5.4]
PKNH_1258600  phosphoenolpyruvate carboxykinase, putative [KO:K01610] [EC:4.1.1.49]
PKNH_0922300  pyruvate dehydrogenase E1 component subunit alpha, putative [KO:K00161] [EC:1.2.4.1]
PKNH_1235800  pyruvate dehydrogenase E1 component subunit beta, putative [KO:K00162] [EC:1.2.4.1]
PKNH_0605000  dihydrolipoamide acetyltransferase, putative [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pkn00010  Glycolysis / Gluconeogenesis
pkn00061  Fatty acid biosynthesis
pkn00062  Fatty acid elongation
pkn00071  Fatty acid degradation
pkn00190  Oxidative phosphorylation
pkn00220  Arginine biosynthesis
pkn00250  Alanine, aspartate and glutamate metabolism
pkn00280  Valine, leucine and isoleucine degradation
pkn00350  Tyrosine metabolism
pkn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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