KEGG   PATHWAY: pkn03008
Entry
pkn03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Plasmodium knowlesi
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
pkn03008  Ribosome biogenesis in eukaryotes
pkn03008

Organism
Plasmodium knowlesi [GN:pkn]
Gene
PKNH_0901300  casein kinase II beta chain, putative [KO:K03115]
PKNH_1259000  casein kinase II beta chain, putative [KO:K03115]
PKNH_0906000  casein kinase 2, alpha subunit, putative [KO:K03097] [EC:2.7.11.1]
PKNH_1119900  RNA-binding protein, putative [KO:K14545]
PKNH_1443700  WD repeat-containing protein, putative [KO:K14553]
PKNH_1234100  U3 small nucleolar RNA-associated protein 12, putative [KO:K14556]
PKNH_0116600  periodic tryptophan protein 2, putative [KO:K14558]
PKNH_0611500  U3 small nucleolar ribonucleoprotein MPP10, putative [KO:K14559]
PKNH_1220500  U3 small nucleolar ribonucleoprotein IMP3, putative [KO:K14560]
PKNH_1312600  u3 small nucleolar ribonucleoprotein protein. u3 small nucleolar ribonucleoprotein protein [KO:K14561]
PKNH_1351000  rRNA 2'-O-methyltransferase fibrillarin, putative [KO:K14563] [EC:2.1.1.-]
PKNH_0916200  nucleolar protein 56, putative [KO:K14564]
PKNH_0808200  nucleolar protein 5, putative [KO:K14565]
PKNH_0921700  13 kDa ribonucleoprotein-associated protein, putative [KO:K12845]
PKNH_1340500  H/ACA ribonucleoprotein complex subunit 4, putative [KO:K11131] [EC:5.4.99.-]
PKNH_1409900  snornp gar1-like protein [KO:K11128]
PKNH_0419600  H/ACA ribonucleoprotein complex subunit 3, putative [KO:K11130]
PKNH_0501500  uncharacterized protein [KO:K14566]
PKNH_0115800  U3 small nucleolar RNA-associated protein 14, putative [KO:K14567]
PKNH_1315500  ribosome biogenesis protein nep1-like protein [KO:K14568] [EC:2.1.1.260]
PKNH_0206800  aarp2 protein, putative [KO:K14569]
PKNH_0604900  N-acetyltransferase, GNAT family, putative [KO:K14521] [EC:2.3.1.-]
PKNH_1210000  RNA 3'-terminal phosphate cyclase-like protein, putative [KO:K11108]
PKNH_0909400  conserved Plasmodium protein, unknown function [KO:K14530] [EC:3.1.26.5]
PKNH_0707400  exoribonuclease, putative [KO:K12619] [EC:3.1.13.-]
PKNH_1137100  nucleolar GTP-binding protein 1, putative [KO:K06943]
PKNH_1335000  nucleolar GTP-binding protein 2, putative [KO:K14537]
PKNH_1003900  nucleolar preribosomal GTPase, putative [KO:K14538]
PKNH_1425900  AAA family ATPase, putative [KO:K14571]
PKNH_0421100  dynein-related AAA-type ATPase, putative [KO:K14572]
PKNH_0511400  uncharacterized protein [KO:K11883]
PKNH_0915400  GTP-binding nuclear protein RAN/TC4, putative [KO:K07936]
PKNH_0840200  exportin-1, putative [KO:K14290]
PKNH_0213900  NMD3-like protein [KO:K07562]
PKNH_1267800  eukaryotic translation initiation factor 6, putative [KO:K03264]
PKNH_1347400  ribosome maturation protein SBDS, putative [KO:K14574]
PKNH_0202600  uncharacterized protein [KO:K18532] [EC:2.7.4.3]
PKNH_1450300  serine/threonine protein kinase RIO1, putative [KO:K07178] [EC:2.7.11.1]
PKNH_0512800  serine/threonine protein kinase RIO2, putative [KO:K07179] [EC:2.7.11.1]
PKNH_1001200  18S ribosomal RNA [KO:K01979]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
pkn03010  Ribosome
KO pathway
ko03008   

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