KEGG   PATHWAY: pyo03008
Entry
pyo03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Plasmodium yoelii
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
pyo03008  Ribosome biogenesis in eukaryotes
pyo03008

Organism
Plasmodium yoelii [GN:pyo]
Gene
PY17X_0945700  casein kinase II beta chain, putative [KO:K03115]
PY17X_1361200  casein kinase II subunit beta [KO:K03115]
PY17X_0941100  uncharacterized protein [KO:K03097] [EC:2.7.11.1]
PY17X_1129900  RNA-binding protein, putative [KO:K14545]
PY17X_1370700  U3 small nucleolar RNA-associated protein 15, putative [KO:K14549]
PY17X_1441800  uncharacterized protein [KO:K14553]
PY17X_1315600  U3 small nucleolar RNA-associated protein 12, putative [KO:K14556]
PY17X_1231400  uncharacterized protein [KO:K14558]
PY17X_0512300  uncharacterized protein [KO:K14559]
PY17X_1328700  uncharacterized protein [KO:K14560]
PY17X_0712200  uncharacterized protein [KO:K14561]
PY17X_1037500  rRNA 2'-O-methyltransferase fibrillarin, putative [KO:K14563] [EC:2.1.1.-]
PY17X_0931600  uncharacterized protein [KO:K14564]
PY17X_1210200  uncharacterized protein [KO:K14565]
PY17X_0926400  13 kDa ribonucleoprotein-associated protein, putative [KO:K12845]
PY17X_1027600  H/ACA ribonucleoprotein complex subunit 4, putative [KO:K11131] [EC:5.4.99.-]
PY17X_0721900  60S ribosomal protein L7ae/L30e, putative [KO:K11129]
PY17X_1409800  H/ACA ribonucleoprotein complex subunit 1, putative [KO:K11128]
PY17X_1013400  uncharacterized protein [KO:K11130]
PY17X_0712600  rRNA-processing protein FCF1, putative [KO:K14566]
PY17X_1230600  U3 small nucleolar RNA-associated protein 14, putative [KO:K14567]
PY17X_0709500  ribosomal RNA small subunit methyltransferase NEP1, putative [KO:K14568] [EC:2.1.1.260]
PY17X_0208000  asparagine and aspartate rich protein 2, putative [KO:K14569]
PY17X_0506000  N-acetyltransferase, GNAT family, putative [KO:K14521] [EC:2.3.1.-]
PY17X_1338900  RNA 3'-terminal phosphate cyclase protein [KO:K11108]
PY17X_1223300  ribonucleases P/MRP protein subunit POP1, putative [KO:K01164] [EC:3.1.26.5]
PY17X_1128100  ribonuclease P protein subunit p29, putative [KO:K03538] [EC:3.1.26.5]
PY17X_0937900  conserved Plasmodium protein, unknown function [KO:K14530] [EC:3.1.26.5]
PY17X_0813900  uncharacterized protein [KO:K12619] [EC:3.1.13.-]
PY17X_0112800  uncharacterized protein [KO:K06943]
PY17X_1022300  nucleolar GTP-binding protein 2, putative [KO:K14537]
PY17X_1246800  nucleolar preribosomal GTPase, putative [KO:K14538]
PY17X_1425200  cell division cycle protein 48 [KO:K14571]
PY17X_1011900  dynein-related AAA-type ATPase, putative [KO:K14572]
PY17X_1038700  RNA-binding protein, putative [KO:K14573]
PY17X_0720800  uncharacterized protein [KO:K11883]
PY17X_0932300  GTP-binding nuclear protein RAN/TC4 [KO:K07936]
PY17X_0403700  uncharacterized protein [KO:K14290]
PY17X_0214800  60S ribosomal export protein NMD3, putative [KO:K07562]
PY17X_1352600  eukaryotic translation initiation factor 6 protein [KO:K03264]
PY17X_1034000  ribosome maturation protein SBDS, putative [KO:K14574]
PY17X_1015000  large subunit GTPase 1, putative [KO:K14539] [EC:3.6.1.-]
PY17X_0204200  adenylate kinase-like protein 1, putative [KO:K18532] [EC:2.7.4.3]
PY17X_1448100  extragenic suppressor of the BimD6 mutation [KO:K07178] [EC:2.7.11.1]
PY17X_0522800  serine/threonine protein kinase RIO2, putative [KO:K07179] [EC:2.7.11.1]
PY17X_0522400  18S ribosomal RNA [KO:K01979]
PY17X_1026400  5S ribosomal RNA [KO:K01981]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
pyo03010  Ribosome
KO pathway
ko03008   

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