KEGG   PATHWAY: tbg00020
Entry
tbg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Trypanosoma brucei gambiense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tbg00020  Citrate cycle (TCA cycle)
tbg00020

Module
tbg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tbg00020]
tbg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tbg00020]
tbg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tbg00020]
Other DBs
GO: 0006099
Organism
Trypanosoma brucei gambiense [GN:tbg]
Gene
TbgDal_X16220  citrate synthase, putative [KO:K01647] [EC:2.3.3.1]
TbgDal_X17200  aconitase, putative [KO:K01681] [EC:4.2.1.3]
TbgDal_VIII3420  isocitrate dehydrogenase [NADP], mitochondrial precursor, putative [KO:K00031] [EC:1.1.1.42]
TbgDal_XI950  isocitrate dehydrogenase, putative [KO:K00031] [EC:1.1.1.42]
TbgDal_XI11200  2-oxoglutarate dehydrogenase E1 component,putative [KO:K00164] [EC:1.2.4.2]
TbgDal_XI1540  2-oxoglutarate dehydrogenase subunit, putative [KO:K00164] [EC:1.2.4.2]
TbgDal_XI13100  2-oxoglutarate dehydrogenase, E2 component,dihydrolipoamide succinyltransferase, putative [KO:K00658] [EC:2.3.1.61]
TbgDal_III4790  dihydrolipoamide dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
TbgDal_IV5230  dihydrolipoamide dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
TbgDal_VIII7640  acetoin dehydrogenase e3 component, putative [KO:K00382] [EC:1.8.1.4]
TbgDal_XI18870  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
TbgDal_III2200  succinyl-CoA synthetase alpha subunit, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
TbgDal_X9090  succinyl-CoA ligase [GDP-forming] beta-chain,putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
TbgDal_VIII6750  succinate dehydrogenase flavoprotein, putative [KO:K00234] [EC:1.3.5.1]
TbgDal_IX3110  succinate dehydrogenase, putative [KO:K00235] [EC:1.3.5.1]
TbgDal_III4940  fumarate hydratase, putative [KO:K01676] [EC:4.2.1.2]
TbgDal_XI5700  fumarate hydratase class I, putative [KO:K01676] [EC:4.2.1.2]
TbgDal_XI12570  cytosolic malate dehydrogenase, putative [KO:K00025] [EC:1.1.1.37]
TbgDal_X18820  glycosomal malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
TbgDal_X3180  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
TbgDal_X3190  mitochondrial malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
TbgDal_II2340  glycosomal phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
TbgDal_X15320  pyruvate dehydrogenase E1 component alpha subunit, putative [KO:K00161] [EC:1.2.4.1]
TbgDal_III1650  pyruvate dehydrogenase E1 beta subunit, putative [KO:K00162] [EC:1.2.4.1]
TbgDal_X2850  dihydrolipoamide acetyltransferase, putative [KO:K00627] [EC:2.3.1.12]
TbgDal_X9270  dihydrolipoamide acetyltransferase precursor,putative [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tbg00010  Glycolysis / Gluconeogenesis
tbg00053  Ascorbate and aldarate metabolism
tbg00061  Fatty acid biosynthesis
tbg00062  Fatty acid elongation
tbg00071  Fatty acid degradation
tbg00190  Oxidative phosphorylation
tbg00220  Arginine biosynthesis
tbg00250  Alanine, aspartate and glutamate metabolism
tbg00280  Valine, leucine and isoleucine degradation
tbg00350  Tyrosine metabolism
tbg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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