KEGG   PATHWAY: tbg03008
Entry
tbg03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Trypanosoma brucei gambiense
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
tbg03008  Ribosome biogenesis in eukaryotes
tbg03008

Organism
Trypanosoma brucei gambiense [GN:tbg]
Gene
TbgDal_XI12130  protein kinase ck2 regulatory subunit, putative [KO:K03115]
TbgDal_II980  casein kinase II, alpha chain [KO:K03097] [EC:2.7.11.1]
TbgDal_IX9070  casein kinase II, putative [KO:K03097] [EC:2.7.11.1]
TbgDal_VIII1640  hypothetical protein, conserved [KO:K14549]
TbgDal_XI9440  hypothetical protein, conserved [KO:K14552]
TbgDal_XI11750  hypothetical protein, conserved [KO:K14554]
TbgDal_XI370  hypothetical protein, conserved [KO:K14555]
TbgDal_VII4750  hypothetical protein, conserved [KO:K14556]
TbgDal_X16040  periodic tryptophan protein 2, putative [KO:K14558]
TbgDal_III3860  U3 small nucleolar ribonucleoprotein protein MPP10, putative [KO:K14559]
TbgDal_XI15560  U3 small nucleolar ribonucleoprotein protein IMP3, putative [KO:K14560]
TbgDal_VI2550  U3 small nuclear ribonucleoprotein (snRNP),putative [KO:K14561]
TbgDal_X17780  fibrillarin, putative [KO:K14563] [EC:2.1.1.-]
TbgDal_X17910  fibrillarin, putative [KO:K14563] [EC:2.1.1.-]
TbgDal_X9180  fibrillarin, putative [KO:K14563] [EC:2.1.1.-]
TbgDal_VIII3470  nucleolar protein, putative [KO:K14564]
TbgDal_IX2810  nucleolar RNA binding protein, putative [KO:K14565]
TbgDal_IX2720  NHP2/RS6-like protein [KO:K12845]
TbgDal_X80  centromere/microtubule binding protein cbf5,putative [KO:K11131] [EC:5.4.99.-]
TbgDal_IV520  50S ribosomal protein L7Ae, putative [KO:K11129]
TbgDal_IV220  snoRNP protein GAR1, putative [KO:K11128]
TbgDal_X5760  nucleolar RNA-binding protein, putative [KO:K11130]
TbgDal_X19400  hypothetical protein, conserved [KO:K14566]
TbgDal_X17410  hypothetical protein, conserved [KO:K14567]
TbgDal_II2990  hypothetical protein, conserved [KO:K14568] [EC:2.1.1.260]
TbgDal_VIII4840  hypothetical protein, conserved [KO:K14568] [EC:2.1.1.260]
TbgDal_XI10140  hypothetical protein, conserved [KO:K14569]
TbgDal_V3580  hypothetical protein, conserved [KO:K14521] [EC:2.3.1.-]
TbgDal_IX9050  RNA 3'-terminal phosphate cyclase-like protein,putative [KO:K11108]
TbgDal_VII5630  5'-3' exonuclease XRNA, putative [KO:K12618] [EC:3.1.13.-]
TbgDal_V3480  5'-3' exonuclease, putative [KO:K12619] [EC:3.1.13.-]
TbgDal_X7600  5'-3' exoribonuclease XRND, putative [KO:K12619] [EC:3.1.13.-]
TbgDal_VIII2390  5'-3' exonuclease XRNC, putative [KO:K12619] [EC:3.1.13.-]
TbgDal_XI3440  nucleolar GTP-binding protein 1, putative [KO:K06943]
TbgDal_VII8740  GTP-binding protein, putative [KO:K14537]
TbgDal_XI1760  vesicular transport protein (CDC48 homologue),putative [KO:K14571]
TbgDal_I290  hypothetical protein, conserved [KO:K14572]
TbgDal_XI17950  DRBD10 [KO:K14573]
TbgDal_XI12170  hypothetical protein, conserved [KO:K11883]
TbgDal_III830  GTP-binding nuclear protein rtb2, putative [KO:K07936]
TbgDal_XI16060  exportin 1, putative [KO:K14290]
TbgDal_VII920  hypothetical protein, conserved [KO:K07562]
TbgDal_XI2620  hypothetical protein, conserved [KO:K14284]
TbgDal_VII6690  nuclear transport factor 2 protein, putative [KO:K14285]
TbgDal_X6460  Eukaryotic translation initiation factor 6 (eIF-6), putative [KO:K03264]
TbgDal_IV3150  hypothetical protein, conserved [KO:K14574]
TbgDal_V5820  GTP-binding protein, putative [KO:K14539] [EC:3.6.1.-]
TbgDal_VI3000  hypothetical protein, conserved [KO:K18532] [EC:2.7.4.3]
TbgDal_III6100  hypothetical protein, conserved [KO:K07178] [EC:2.7.11.1]
TbgDal_VI2610  hypothetical protein, conserved [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
tbg03010  Ribosome
KO pathway
ko03008   

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