KEGG   PATHWAY: tbr03018
Entry
tbr03018                    Pathway                                
Name
RNA degradation - Trypanosoma brucei brucei
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
tbr03018  RNA degradation
tbr03018

Other DBs
GO: 0006401
Organism
Trypanosoma brucei brucei [GN:tbr]
Gene
Tb927.5.1200  exosome component CSL4 [KO:K07573]
Tb927.7.4670  ribosomal RNA processing protein 4 [KO:K03679]
Tb09.160.5160  exosome complex exonuclease RRP40 [KO:K03681]
Tb11.01.2820  exosome-associated protein 4 [KO:K12587]
Tb10.6k15.3210  exosome complex exonuclease RRP41A [KO:K11600]
Tb11.01.8320  exosome-associated protein 2 [KO:K03678]
Tb927.6.670  ribosomal RNA processing protein 45 [KO:K03678]
Tb11.02.5380  exosome complex exonuclease RRP44p-like protein [KO:K12585] [EC:3.1.13.-]
Tb927.4.1630  ribosomal RNA processing protein 6 [KO:K12591] [EC:3.1.13.-]
Tb10.6k15.3220  ATP-dependent DEAD/H RNA helicase, putative [KO:K12598] [EC:3.6.4.13]
Tb10.70.6450  transcriptional regulatory protein NOT1 [KO:K12604]
Tb927.3.1920  hypothetical protein, conserved [KO:K12580]
Tb927.6.600  CCR4 associated factor, putative [KO:K12581]
Tb927.4.410  cell differentiation protein, putative [KO:K12606]
Tb927.6.2810  ABC transporter, putative [KO:K12608]
Tb10.6k15.2130  ribonuclease, putative [KO:K01148] [EC:3.1.13.4]
Tb09.211.0930  polyadenylate-binding protein 1, putative [KO:K13126]
Tb11.01.5540  Pab1p-dependent poly(A) ribonuclease subunit, putative [KO:K12572]
Tb10.70.3290  ATP-dependent DEAD-box RNA helicase, putative [KO:K12614] [EC:3.6.4.13]
Tb927.7.4900  5'-3' exonuclease XRNA, putative [KO:K12618] [EC:3.1.13.-]
Tb10.70.0610  5'-3' exoribonuclease XRND, putative [KO:K12619] [EC:3.1.13.-]
Tb927.8.2810  5'-3' exonuclease XRNC, putative [KO:K12619] [EC:3.1.13.-]
Tb11.01.5535  U6 snRNA-associated Sm-like protein LSm4p [KO:K12623]
Tb927.5.4030  U6 snRNA-associated Sm-like protein LSm7p [KO:K12626]
Tb927.3.1780  U6 snRNA-associated Sm-like protein LSm8p [KO:K12627]
Tb10.70.4740  enolase [KO:K01689] [EC:4.2.1.11]
Tb11.01.8100  enolase, putative [KO:K01689] [EC:4.2.1.11]
Tb927.6.3580  ATP-dependent DEAD/H DNA helicase recQ, putative [KO:K03654] [EC:5.6.2.4]
Tb927.3.3270  ATP-dependent phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Tb927.6.3740  heat shock 70 kDa protein, mitochondrial precursor, putative [KO:K04043]
Tb927.6.3800  heat shock 70 kDa protein, mitochondrial precursor, putative [KO:K04043]
Tb927.6.3750  heat shock 70 kDa protein, mitochondrial precursor, putative [KO:K04043]
Tb10.70.0280  chaperonin Hsp60 [KO:K04077] [EC:5.6.1.7]
Tb11.01.6680  chaperonin Hsp60 mitochondrial precursor [KO:K04077] [EC:5.6.1.7]
Tb10.70.0430  chaperonin Hsp60 [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
tbr03015  mRNA surveillance pathway
KO pathway
ko03018   

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