KEGG   PATHWAY: tbr03430
Entry
tbr03430                    Pathway                                
Name
Mismatch repair - Trypanosoma brucei brucei
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
tbr03430  Mismatch repair
tbr03430

Other DBs
GO: 0006298
Organism
Trypanosoma brucei brucei [GN:tbr]
Gene
Tb09.211.4840  mismatch repair protein PMS1, putative [KO:K10858]
Tb927.8.6840  mismatch repair protein MLH1 [KO:K08734]
Tb10.26.1030  DNA mismatch repair protein, putative [KO:K08735]
Tb09.160.3760  mismatch repair protein MSH3, putative [KO:K08736]
Tb11.02.3360  replication factor C subunit 1 [KO:K10754]
Tb927.6.3890  replication factor C, subunit 2, putative [KO:K10755]
Tb11.01.1310  replication factor C subunit 4 [KO:K10755]
Tb09.211.3310  replication factor C subunit 3 [KO:K10756]
Tb10.6k15.2550  replication factor C subunit 5 [KO:K10756]
Tb09.160.3710  proliferative cell nuclear antigen [KO:K04802]
Tb927.8.3220  exonuclease, putative [KO:K10746] [EC:3.1.-.-]
Tb11.01.0870  replication factor A 51kDa subunit [KO:K07466]
Tb927.5.1700  replication Factor A 28 kDa subunit, putative [KO:K10739]
Tb927.2.1800  DNA polymerase delta catalytic subunit, putative [KO:K02327] [EC:2.7.7.7]
Tb927.3.1130  DNA polymerase delta subunit 2, putative [KO:K02328]
Tb927.6.4780  DNA ligase I, putative [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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