KEGG   PATHWAY: tpv03008
Entry
tpv03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Theileria parva
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
tpv03008  Ribosome biogenesis in eukaryotes
tpv03008

Organism
Theileria parva [GN:tpv]
Gene
TP02_0584  casein kinase II subunit beta [KO:K03115]
TP01_0881  casein kinase II beta chain [KO:K03115]
TP04_0659  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
TP02_0337  hypothetical protein [KO:K14548]
TP01_1027  hypothetical protein [KO:K14549]
TP01_0358  hypothetical protein [KO:K14552]
TP02_0764  hypothetical protein [KO:K14553]
TP01_0242  hypothetical protein [KO:K14554]
TP02_0662  hypothetical protein [KO:K14555]
TP02_0738  hypothetical protein [KO:K14556]
TP03_0023  hypothetical protein [KO:K14557]
TP04_0485  hypothetical protein [KO:K14558]
TP01_0160  hypothetical protein [KO:K14559]
TP03_0429  40S ribosomal protein S4 [KO:K14560]
TP01_0039  U3 small nuclear ribonucleoprotein [KO:K14561]
TP04_0795  fibrillarin [KO:K14563] [EC:2.1.1.-]
TP01_0747  hypothetical protein [KO:K14564]
TP02_0550  nuclear protein [KO:K14565]
TP04_0892  hypothetical protein [KO:K12845]
TP01_0589  hypothetical protein [KO:K12845]
TP02_0508  rRNA pseudouridine synthase [KO:K11131] [EC:5.4.99.-]
TP04_0350  small nuclear ribonucleoprotein gar1 [KO:K11128]
TP01_0673  hypothetical protein [KO:K11130]
TP02_0609  hypothetical protein [KO:K14566]
TP01_0778  hypothetical protein [KO:K14567]
TP01_0556  hypothetical protein [KO:K14568] [EC:2.1.1.260]
TP03_0619  hypothetical protein [KO:K14568] [EC:2.1.1.260]
TP03_0061  hypothetical protein [KO:K14569]
TP02_0251  hypothetical protein [KO:K14521] [EC:2.3.1.-]
TP03_0231  RNA 3'-terminal phosphate cyclase [KO:K11108]
TP03_0789  hypothetical protein [KO:K01164] [EC:3.1.26.5]
TP01_1174  hypothetical protein [KO:K03538] [EC:3.1.26.5]
TP02_0909  hypothetical protein [KO:K03539] [EC:3.1.26.5]
TP02_0165  hypothetical protein [KO:K12618] [EC:3.1.13.-]
TP01_0842  5'-3' exonuclease [KO:K12618] [EC:3.1.13.-]
TP04_0369  exoribonuclease [KO:K12619] [EC:3.1.13.-]
TP02_0248  GTP-binding nuclear protein 1 [KO:K06943]
TP02_0708  hypothetical protein [KO:K14537]
TP01_1158  AAA family ATPase [KO:K14571]
TP03_0591  hypothetical protein [KO:K14572]
TP02_0933  hypothetical protein [KO:K14573]
TP01_0331  hypothetical protein [KO:K11883]
TP01_0757  GTP-binding nuclear protein ran [KO:K07936]
TP02_0177  importin beta-related nuclear transport factor [KO:K14290]
TP01_0828  hypothetical protein [KO:K07562]
TP02_0333  translation initiation factor 6 [KO:K03264]
TP01_0347  hypothetical protein [KO:K14574]
TP01_0681  hypothetical protein [KO:K14539] [EC:3.6.1.-]
TP02_0059  hypothetical protein [KO:K14575]
TP02_0203  hypothetical protein [KO:K18532] [EC:2.7.4.3]
TP01_0880  hypothetical protein [KO:K07178] [EC:2.7.11.1]
TP04_0848  hypothetical protein [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
tpv03010  Ribosome
KO pathway
ko03008   

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