KEGG   PATHWAY: tva03030
Entry
tva03030                    Pathway                                
Name
DNA replication - Trichomonas vaginalis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
tva03030  DNA replication
tva03030

Organism
Trichomonas vaginalis [GN:tva]
Gene
TVAG_2v0135900  RNA-DNA hybrid ribonuclease protein [KO:K03469] [EC:3.1.26.4]
TVAG_2v0273870  DNA recombination [KO:K07466]
TVAG_2v0936890  DNA polymerase processivity factor protein [KO:K04802]
TVAG_2v0961780  DNA polymerase processivity factor protein [KO:K04802]
TVAG_2v0306370  single-stranded DNA-dependent ATPase protein [KO:K10742] [EC:5.6.2.3 3.1.-.-]
TVAG_2v0604150  DNA2/NAM7 helicase family [KO:K10742] [EC:5.6.2.3 3.1.-.-]
TVAG_2v1034730  endonuclease protein [KO:K04799] [EC:3.1.-.-]
TVAG_2v0590110  DNA polymerase alpha catalytic subunit family [KO:K02320] [EC:2.7.7.7]
TVAG_2v0999020  DNA polymerase alpha catalytic subunit family [KO:K02320] [EC:2.7.7.7]
TVAG_2v0999300  DNA polymerase alpha catalytic subunit family [KO:K02320] [EC:2.7.7.7]
TVAG_2v0936500  DNA polymerase 2 alpha 70 kDa subunit family [KO:K02321]
TVAG_2v0594750  DNA polymerase delta family [KO:K02321]
TVAG_2v0486780  DNA polymerase 2 alpha 70 kDa subunit family [KO:K02321]
TVAG_2v0409920  DNA primase, eukaryotic-type, small subunit family protein [KO:K02684] [EC:2.7.7.102]
TVAG_2v0994810  DNA primase protein [KO:K02685]
TVAG_2v0558780  DNA primase protein [KO:K02685]
TVAG_2v0043000  DNA polymerase zeta catalytic subunit family [KO:K02327] [EC:2.7.7.7]
TVAG_2v0960650  DNA polymerase catalytic subunit family [KO:K02327] [EC:2.7.7.7]
TVAG_2v0268000  DNA polymerase delta family [KO:K02328]
TVAG_2v0599640  DNA replication proofreading [KO:K02324] [EC:2.7.7.7]
TVAG_2v0586170  error-prone translesion synthesis [KO:K02325] [EC:2.7.7.7]
TVAG_2v1010570  negative regulation of DNA helicase protein [KO:K02540] [EC:5.6.2.3]
TVAG_2v0144490  MCM family [KO:K02541] [EC:5.6.2.3]
TVAG_2v0956020  DNA replication licensing factor MCM family member family [KO:K02212] [EC:5.6.2.3]
TVAG_2v0946980  DNA replication licensing factor MCM family member family [KO:K02209] [EC:5.6.2.3]
TVAG_2v0998700  DNA replication licensing factor MCM family member family [KO:K02542] [EC:5.6.2.3]
TVAG_2v0711800  DNA replication licensing factor MCM family member family [KO:K02210] [EC:5.6.2.3]
TVAG_2v0982490  DNA metabolic process [KO:K10739]
TVAG_2v0062560  single-stranded DNA binding protein 12k chain [KO:K10740]
TVAG_2v0221340  DNA clamp loader protein [KO:K10754]
TVAG_2v0947390  chromosome transmission fidelity factor 18 family [KO:K10754]
TVAG_2v0677490  DNA clamp loader protein [KO:K10754]
TVAG_2v0493120  DNA replication [KO:K10755]
TVAG_2v0219240  DNA replication [KO:K10755]
TVAG_2v1077760  replication factor C / DNA polymerase III gamma-tau subunit family [KO:K10755]
TVAG_2v0952230  DNA replication [KO:K10756]
TVAG_2v1000890  DNA replication [KO:K10756]
TVAG_2v0595990  RNA-DNA hybrid ribonuclease protein [KO:K10743] [EC:3.1.26.4]
TVAG_2v0745010  ribonuclease H2 subunit B family [KO:K10744]
TVAG_2v0860790  RNase H2-C domain-containing protein [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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