KEGG   PATHWAY: tva03430
Entry
tva03430                    Pathway                                
Name
Mismatch repair - Trichomonas vaginalis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
tva03430  Mismatch repair
tva03430

Other DBs
GO: 0006298
Organism
Trichomonas vaginalis [GN:tva]
Gene
4745427  TVAGG3_0947390; chromosome transmission fidelity factor 18 family [KO:K10754]
4746221  TVAGG3_1077760; replication factor C / DNA polymerase III gamma-tau subunit family [KO:K10755]
4757007  TVAGG3_0961780; DNA polymerase processivity factor protein [KO:K04802]
4760653  TVAGG3_0268000; DNA polymerase delta family [KO:K02328]
4762685  TVAGG3_0411010; mismatch repair protein Mlh1B (MutL-like protein) [KO:K08734]
4763458  TVAGG3_0154910; mismatch repair protein Msh2 (MutS-like protein) [KO:K08735]
4766051  TVAGG3_0172890; DNA mismatch repair protein, MLH1-like [KO:K08734]
4766447  TVAGG3_0062560; single-stranded DNA binding protein 12k chain [KO:K10740]
4768434  TVAGG3_0980710; mismatch repair protein Msh6 (MutS-like protein) [KO:K08737]
4768453  TVAGG3_0221340; DNA clamp loader protein [KO:K10754]
4768509  TVAGG3_0043000; DNA polymerase zeta catalytic subunit family [KO:K02327] [EC:2.7.7.7]
4768664  TVAGG3_0001070; DNA mismatch repair protein MLH1C [KO:K08734]
4769140  TVAGG3_0952230; DNA replication [KO:K10756]
4769478  TVAGG3_0982490; DNA metabolic process [KO:K10739]
4769529  TVAGG3_0493120; DNA replication [KO:K10755]
4771038  TVAGG3_0166250; 5'-3' exodeoxyribonuclease protein [KO:K10746] [EC:3.1.-.-]
4771779  TVAGG3_0073700; 5'-3' exodeoxyribonuclease protein [KO:K10746] [EC:3.1.-.-]
4771963  TVAGG3_0219240; DNA replication [KO:K10755]
4772184  TVAGG3_0011960; 5'-3' exodeoxyribonuclease protein [KO:K10746] [EC:3.1.-.-]
4772743  TVAGG3_0960650; DNA polymerase catalytic subunit family [KO:K02327] [EC:2.7.7.7]
4774817  TVAGG3_1000890; DNA replication [KO:K10756]
4775235  TVAGG3_0936890; DNA polymerase processivity factor protein [KO:K04802]
5464349  TVAGG3_0273870; DNA recombination [KO:K07466]
5465701  TVAGG3_0677490; DNA clamp loader protein [KO:K10754]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

  All links  
No link information was found.   
DBGET integrated database retrieval system