KEGG   PATHWAY: tva03430
Entry
tva03430                    Pathway                                
Name
Mismatch repair - Trichomonas vaginalis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
tva03430  Mismatch repair
tva03430

Other DBs
GO: 0006298
Organism
Trichomonas vaginalis [GN:tva]
Gene
TVAG_2v0172890  DNA mismatch repair protein, MLH1-like [KO:K08734]
TVAG_2v0001070  DNA mismatch repair protein MLH1C [KO:K08734]
TVAG_2v0411010  mismatch repair protein Mlh1B (MutL-like protein) [KO:K08734]
TVAG_2v0980710  mismatch repair protein Msh6 (MutS-like protein) [KO:K08737]
TVAG_2v0154910  mismatch repair protein Msh2 (MutS-like protein) [KO:K08735]
TVAG_2v0221340  DNA clamp loader protein [KO:K10754]
TVAG_2v0947390  chromosome transmission fidelity factor 18 family [KO:K10754]
TVAG_2v0677490  DNA clamp loader protein [KO:K10754]
TVAG_2v0493120  DNA replication [KO:K10755]
TVAG_2v0219240  DNA replication [KO:K10755]
TVAG_2v1077760  replication factor C / DNA polymerase III gamma-tau subunit family [KO:K10755]
TVAG_2v0952230  DNA replication [KO:K10756]
TVAG_2v1000890  DNA replication [KO:K10756]
TVAG_2v0936890  DNA polymerase processivity factor protein [KO:K04802]
TVAG_2v0961780  DNA polymerase processivity factor protein [KO:K04802]
TVAG_2v0166250  5'-3' exodeoxyribonuclease protein [KO:K10746] [EC:3.1.-.-]
TVAG_2v0073700  5'-3' exodeoxyribonuclease protein [KO:K10746] [EC:3.1.-.-]
TVAG_2v0011960  5'-3' exodeoxyribonuclease protein [KO:K10746] [EC:3.1.-.-]
TVAG_2v0811690  5'-3' exodeoxyribonuclease protein [KO:K10746] [EC:3.1.-.-]
TVAG_2v0273870  DNA recombination [KO:K07466]
TVAG_2v0982490  DNA metabolic process [KO:K10739]
TVAG_2v0062560  single-stranded DNA binding protein 12k chain [KO:K10740]
TVAG_2v0043000  DNA polymerase zeta catalytic subunit family [KO:K02327] [EC:2.7.7.7]
TVAG_2v0960650  DNA polymerase catalytic subunit family [KO:K02327] [EC:2.7.7.7]
TVAG_2v0268000  DNA polymerase delta family [KO:K02328]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

DBGET integrated database retrieval system