KEGG   Prunus avium (sweet cherry): 110750032Help
Entry
110750032         CDS       T05161                                 

Definition
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110750032
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pavi03041]
    110750032
Enzymes [BR:pavi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     110750032
Spliceosome [BR:pavi03041]
 Complex C
  Other components
   Step II factors
    110750032
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HA2 OB_NTP_bind DEAD
Motif
Other DBs
NCBI-GeneID: 110750032
NCBI-ProteinID: XP_021805975
Position
Unknown
AA seq 503 aa AA seqDB search
MVICLPTRAPIDLQRLDLVTQYLAEAGYTTMGKIGCTQPRRVAAMSVAKRVAEEFGCRLG
EEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVVMLDEAHERTIFTDVLFG
LLKKLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDA
SLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPII
SAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTG
NIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRA
QDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYI
HPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFFKVADPTKMSKRKRQ
ERIEPLYDRYHEPNSWRLSKRRA
NT seq 1512 nt NT seq  +upstreamnt  +downstreamnt
atggtgatttgtcttccaacgcgtgccccaattgacttgcagaggcttgacttggtaacg
cagtatcttgcagaagcgggttacacgacaatgggtaagattggttgtacacagccacgt
agggtggctgccatgtctgtggccaagagggttgctgaagagtttggttgtcgtttagga
gaggaagtcggctatgcaattcgttttgaggattgcactggtccagatactgtcatcaag
tacatgactgatggtatgcttcttagggagattttgattgatgagaacctttctcagtat
tctgtggtcatgcttgatgaagctcatgagaggacaatcttcacagatgttctttttgga
ctactgaagaagcttgtgaagcggagaccagaccttcgtttgattgtcacatctgctact
ttggatgcggagaagttttccggttatttcttcaactgtaacatcttcaccatccctggg
agaacttttcctgtagagatactctacactaaacagccggaaagtgactatcttgatgca
tctctaataactgttctacaaatacacttgacagaacctgaaggtgacatccttcttttc
ttgactggacaagaggagattgattttgcatgccagtctctttatgagaggatgaaaggt
cttggtaaaaatgtccctgagttgattatcctaccagtgtacagtgcccttcctatcatt
tctgccatggaacaattgtacagtttaggagcactggatgaggaggggctgctcaccaaa
ttgggtaggaaaatggctgagtttcctctggatccacccttgtctaagatgctattggcc
agtgtggaccttggatgcagtgatgagatcttgaccatcattgcaatgattcagactggt
aatattttttacaggcctagggaaaaacaagcccaggcagatcagaagagagccaagttt
ttccagccagagggagatcatctgactttacttgcagtctatgaggcatggaaagctaag
aatttttcagggccatggtgttttgagaactttgttcagtctcgatccttgaggagggca
caggatgtcagaaaacagcttctcagcatcatggacaagtataaactagatgttgtgagt
gctggaaagaattttacaaagatcaggaaggcaattacggcggggtttttcttccacggt
gctagaaaggacccgcaggagggttatagaaccctagtggagaaccaaccagtttatata
cacccaagcagcgccctcttccagagacaaccagattgggtgatctaccatgagctggtt
atgaccacaaaggagtacatgcgcgaggtgacggtcgtcgaccccaaatggctcgtggaa
ctggcacccaggttcttcaaagtggcagatcccaccaagatgagcaagcgcaagcgtcaa
gaacgtattgaaccgctatatgatagataccatgaacctaactcctggcgtcttagtaag
agacgtgcttga

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