KEGG   Prunus avium (sweet cherry): 110761066
Entry
110761066         CDS       T05161                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
  KO
K14327  regulator of nonsense transcripts 2
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03013  Nucleocytoplasmic transport
pavi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110761066
   03015 mRNA surveillance pathway
    110761066
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pavi03019]
    110761066
Messenger RNA biogenesis [BR:pavi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     110761066
   mRNA cycle factors
    P-body specific factors
     110761066
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 110761066
NCBI-ProteinID: XP_021819136
UniProt: A0A6P5SZK4
Position
Unknown
AA seq 1183 aa
MDHHEEESRAGGEPHGKQDDEEAAARLEEIKKSIEAKMALRQSNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLLQGLLKIFFPGKSGDDLDMDKNLRAMKKRSTLKLLLELFFVGVIED
GGIFVNIIKDLTSGEHLKDRDTTQTNLTLLASFARQGRMFINLPLSGPEIHEEFFKGLNI
TTEHKKFFRKAFQTYYDAAAELLQSEHTSLRQMEHENSKILNAKGELSDENVSSYEKLRK
SYEQLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEDASSPAAGKDSSVLEAIWDDEDTR
AFYECLPDLRAFVPAVLLGEADKSNDQSAKAQEQPTEPTLESDQSQQTTEDTGEASADVG
ALQEGKSIEKGKDKEEKDKEKIKDLDKEKGDRKGENEKEKLKSIEGTNLDALLQRLPGCV
SRDLIDQLTVEFCYLNSKANRKKLVRAVFNVPRTSLELLPYYSRMVATLSTCMKDVSSML
LAMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKVAPAGLVFSCLKACLDDFTHHNI
DVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER
SARVTKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWGECEPYLLKCFMKVHKGKYG
QIHLIASLTAGLSRYHDQFAVSVVDEVLEEIRLGLELNEYGMQQRRIAHMRFLGELYNYE
HVDSSVIFETLYLILVFGHGTQEQQDVLDPPEDCFRIRMVITLLETCGHYFDRGSSKRKL
DRFLMHFQRYILSKGVLPLDVEFDIQDLFAELRPNMTRYSSIDEVNAALVELEEHDRTVS
TDKANNEKHSDTEKPSRRTTSNKKSVNGTEENGVRHGDHGDSDSDSGSGTIDPDGHDEEE
LDEENHGDGSDSEEEDDDGGGPASDEDDEVHVRQKVAELDPQEEANFELDLKAVMQESME
QRRLELRGRPTLNMMIPMNVFEGSIKDHHGRGVGGESGDEALDEESGGSKEVQVKVLVKR
GNKQQTKQMYIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNGLGNQTLNY
MQSGGNRVAGRGSNWEGTSGRGGGTRHRYHSYSGGGVYYSRKK
NT seq 3552 nt   +upstreamnt  +downstreamnt
atggatcaccatgaggaggaatcccgtgctgggggtgaacctcatgggaagcaagatgat
gaggaagctgctgctcggcttgaggaaatcaagaaatcaattgaggcaaagatggctctt
cgtcaaagcaatttgaaccctgagaggcctgacacagggtttcttaggacactggattct
agcattaagcgcaacacagcggttattaaaaaactgaagcagataaatgaagagcagcgg
gaagggctgatggatgacttgagaggtgtcaacctaagcaaatttgtcagtgaagctgtt
actgctatttgtgatgccaagcttagatcatcggacattcaagcagcagttcagatctgc
tctctgcttcatcaaagatacaaagacttctccccaagcctacttcaaggtcttttgaaa
atcttctttcccggaaagtctggggatgacttagacatggacaagaacctgagggccatg
aagaagcgaagcactttgaaactccttttggaacttttctttgttggagtcatagaagat
ggtggtatttttgtgaatatcattaaggatcttaccagtggagaacacttaaaggatcgg
gatactactcagacaaatttgactcttcttgctagttttgctcggcagggaagaatgttt
attaaccttccactctctgggccagaaattcacgaagagtttttcaagggccttaatatc
acaacagagcataagaaattcttcaggaaggcatttcaaacatattatgatgctgcagca
gaactacttcaatccgagcatacttcacttcgccaaatggagcacgaaaattctaaaatc
cttaatgctaaaggagagctcagtgatgaaaatgtctcttcatatgagaaactgcggaaa
tcttatgaacaattgtaccgcaatgtctcatctttagcagaagcacttgatatgcagcct
ccagtaatgccagaggatggtcatacaactagggttactagtggagaggatgcttcatct
ccagctgctggaaaggactcttctgtacttgaagccatatgggatgatgaagatacgagg
gctttctatgagtgcttaccagatcttagagcgtttgttccggcggtattattgggagaa
gcggataaaagcaatgatcaatctgcaaaggctcaagaacaaccaactgagcccacactt
gaatcagaccaaagtcaacagactacagaagatactggggaggcatctgcagatgttggt
gctttacaggagggcaaaagcatagagaaagggaaggacaaggaagaaaaggataaggag
aagattaaagatctggacaaagagaaaggcgatagaaaaggggagaacgagaaagagaaa
cttaaaagcatcgaagggacaaatttggatgctttactgcagaggcttcctggttgcgtg
agccgtgatcttattgatcagttgactgtagagttttgttatttaaattcaaaagcaaat
cggaaaaagcttgtgagggcagtgtttaatgttcccaggacatcattggagctactacct
tactattcacgcatggttgccacactgtcaacttgtatgaaggatgtatcttccatgctc
cttgcaatgctggaagaagagttcaacttcttaattaataaaaaggatcaaatgaacatt
gaaacaaagattaggaacattagatttattggagaactctgcaagtttaaagtcgcacca
gctggtcttgtctttagttgtttgaaggcttgtttagatgatttcactcatcataacatt
gatgttgcttgcaatcttcttgagacttgcgggcgttttctgtatcggtctcctgaaact
accgtgcggatggctaacatgttggaaatattaatgcgtttgaagaatgtaaaaaattta
gatcctcggcacagcacccttgttgaaaatgcttactacctgtgcaaaccgcctgaaaga
tccgcacgagtcactaaagtccgtcctccattgcatcagtatataaggaagttgctattc
tcagatctcgataagtctacaatagagcatgtgctcaggcaactgcgtaaactaccatgg
ggtgaatgtgagccatatcttttaaaatgctttatgaaggttcacaaagggaagtatggc
cagatccacttgattgcttcgctgactgctggtctgagtcgctaccatgatcaatttgct
gtatctgttgttgacgaggttttagaggagatcaggcttggcctagaattaaatgagtat
gggatgcagcaaagacggattgcccatatgcgattcttaggagagctatacaactatgag
catgtagattcttctgttatttttgagactctttacttgattcttgtctttggccatggc
acacaagagcagcaagatgtactggatccaccagaagattgtttccgcattaggatggtt
attactcttctggagacctgtggccactactttgaccgaggctcttccaagaggaagctt
gatcgattcttgatgcacttccagagatatatactaagcaaaggagtactcccactggat
gttgaatttgacatacaggacttatttgcagaactacgccccaacatgacccgatactca
tccattgatgaagtaaatgcagctctagtagaacttgaggagcatgatcgtactgtctcc
actgacaaggccaataatgagaagcattctgacactgaaaagccttcaaggaggaccaca
tccaacaaaaagtctgtgaatggtactgaggaaaatggtgtaaggcatggagaccatgga
gatagtgacagtgattcaggaagtggcaccattgatccagatggacatgacgaagaagaa
ttagatgaagagaatcatggtgatggatctgacagtgaagaggaggatgatgatgggggt
ggacctgcatctgatgaggatgatgaagtccatgtcagacagaaggttgcagagctggat
cctcaggaagaagcaaattttgagctagatctcaaagctgttatgcaggaaagcatggag
caacgcaggctagagttgcgaggccgacctacattaaatatgatgataccaatgaatgtg
tttgagggttccatcaaggatcatcatggaagaggggttggaggggaaagtggagatgag
gctttggatgaagagtctggaggaagcaaggaggtgcaggtgaaagttcttgtgaagcgt
ggtaacaaacaacaaacaaaacagatgtacatcccacgggattgctcgcttatacagagt
acgaaacagaaagaagcagcagagcttgaagagaaacaagacatcaagaggctggttttg
gagtataatgatagagaagaggaggagcttaatggattggggaaccaaactttgaactat
atgcagagtgggggcaacagagttgctggccgtggcagcaattgggaaggaactagtggt
agaggtggtggaacacgtcatagatatcatagttattcaggtgggggggtttattacagc
cggaaaaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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