KEGG   Prunus avium (sweet cherry): 110769398
Entry
110769398         CDS       T05161                                 
Name
(RefSeq) replication factor C subunit 1 isoform X1
  KO
K10754  replication factor C subunit 1
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03030  DNA replication
pavi03410  Base excision repair
pavi03420  Nucleotide excision repair
pavi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110769398
   03410 Base excision repair
    110769398
   03420 Nucleotide excision repair
    110769398
   03430 Mismatch repair
    110769398
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pavi03032]
    110769398
   03400 DNA repair and recombination proteins [BR:pavi03400]
    110769398
DNA replication proteins [BR:pavi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110769398
DNA repair and recombination proteins [BR:pavi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110769398
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT AAA_22 AAA_30 Rad17 DNA_pol3_delta Gp44_lid AAA_19 BRCT_2 AAA_18 nSTAND3 AAA_16 AAA_14 RuvB_N AAA_5 Sigma54_activ_2 AAA_assoc_2 Zeta_toxin AAA_24 AAA_28 RNA_helicase NTPase_1 RsgA_GTPase
Other DBs
NCBI-GeneID: 110769398
NCBI-ProteinID: XP_021829047
UniProt: A0A6P5TPK5
Position
Unknown
AA seq 965 aa
MSQADIRKWFMKSHDKGNGKKPAPTTSQTPSTAKEEPKEPVHGGQENSGRRKTSKYFTTD
KPKDEKETEVPAKRKTHKEPDESVKPSPAKKVHKVVDDDDDFVLPHLKKNSVDATPRKKL
KSASGMGVAQKLTAIDEGGDDDVKDAESHCKPGGRGRGGRGTSAGPAGGRGRGAGRGGFM
NFGDRKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSK
KTNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDIIRASTRAKVPVQEAKKSVDDAAAAS
LPKKSPNKVASKKDCAGSSLASSVSHKQLESDASHARRKKQTTEHSASTWTEKYRPKVPN
DIIGNQSLVKQLHDWLAHWHEQFLDTGNKKKGKNPTNSGAKKAVLLSGTPGIGKTTSAKL
VSQMLGFQTIEVNASDSRGKADSKIEKGIGGSNANSIKELVSNKALSMDGLKHPKTVLIM
DEVDGMSAGDRGGVADLIASIKISKIPVICICNDRYSQKLKSLVNYCLLLSFRKPTKQQM
AKRLMQIANAEGLKVNEIALEELAEKVNGDMRMAVNQLQYMSLSMSVIKYDDVRQRLLSS
AKDEDISPFTAVDKLFGFNAGKLRMDERVDLSMSDPDLVPLLIQENYINYRPSSAVKDDS
GIKRMNLIARAAESIGNGDIFNVQIRKYRQWQLSQSACLSSSIFPAALLRGQRETLEQGE
RNFNRFGGWLGKNSTLGKNLRLLEDLHVHLLASRESSSGRETLRVEYLSLLLKRLTVPLR
ELPKDEAVHKVVDFMNTYSISQDDFDTIVELSKFQGHPNPLDGIQPAVKAALTKAYKEGS
KTRMVRAADFVTFPGMKKAPKKRIAAILEPSVDVIGENNDDTLVESEEENSSDTEDLEGS
AAGEKLQQELKSLNTKGVHVQFDLKGATNSSAKKKTPTSRGRGGSSAAAEKKGGQGSGAS
GKRKR
NT seq 2898 nt   +upstreamnt  +downstreamnt
atgtcacaggcagatattaggaagtggtttatgaagtcgcatgacaagggcaatggcaag
aaacctgcgccgactacttctcagactccttctacagccaaggaagagcctaaagaacca
gtgcatggaggtcaagagaattcaggcaggaggaaaactagcaagtattttaccacagat
aagccaaaagatgaaaaagaaactgaagttccagccaaaagaaagactcacaaggagcct
gatgaatccgtgaaaccctcacctgcaaaaaaagttcacaaagttgtcgatgacgacgat
gattttgtcttacctcatttgaagaagaactcagttgatgcaactcctagaaagaaattg
aagagtgcatctggcatgggagtcgcacagaaacttacggctattgatgaaggtggtgat
gatgacgtcaaggatgctgaatctcattgcaagcctggtggtaggggtcgtggtggaaga
ggtacttccgcaggaccagctggtggaagaggcaggggtgctggacgaggtggatttatg
aatttcggagatagaaaagatcctccacacaaaggagaaaaggaagttcctgaaggtgct
ccagactgtttagctggtttaacttttgtaattagtggtacacttgacagtttggaaaga
gaggaagcagaggatttgataaaacgtcatggcggtcgtattactggatctgtcagcaag
aaaacgaactatcttttatgtgatgaagatattgagggaaggaaatcctctaaagccaaa
gaacttggtactgcttttctcaccgaggatggactgtttgatattattcgggcatctacc
cgtgctaaagtacctgtgcaagaggcaaagaaatctgtggatgatgcggcagcagcatct
ttgcccaagaaaagtcctaataaagtagcatcaaagaaagattgtgctggaagctccttg
gcatcaagtgtatcccacaaacaattggagtcagatgcttcccatgctaggcgtaagaag
caaactaccgagcattccgcctctacttggacagaaaagtataggccaaaggttccaaat
gacattatcgggaatcagtcactggtaaagcagcttcatgattggttggcacattggcat
gagcaatttcttgatactggaaataagaaaaaaggcaaaaacccaaccaattctggtgcc
aaaaaggctgtactattaagtggaacgcctggtatagggaaaacgacgtccgctaagtta
gtcagtcagatgcttggtttccagacaattgaggtaaatgctagtgacagtcgtgggaaa
gctgattccaagattgaaaagggaattggtggaagcaacgcaaattctattaaagagctt
gtcagcaacaaggccctgagcatggatggattgaagcatcccaaaactgtgctaattatg
gatgaggttgatgggatgtctgctggagatcggggaggagttgctgatcttattgctagc
ataaagatttctaaaattcctgttatctgcatttgtaatgatcgttacagtcagaaactg
aaaagtcttgtgaactactgtttacttctcagctttcggaaacctactaaacaacagatg
gcaaagaggttgatgcaaattgcaaatgctgaaggacttaaagttaatgagattgctctt
gaggaactcgcagaaaaagttaatggagacatgcgaatggcagttaaccagttgcagtat
atgagcctatcaatgtctgtcattaaatacgatgatgtaaggcagcgcttattaagcagt
gcaaaggatgaagatatttcaccattcacagctgttgacaagctgtttggttttaatgca
ggaaagttgcggatggatgagcgtgttgacctgagcatgagtgatcctgatctagtccct
cttcttatccaggaaaattatatcaactataggccaagttcggcagtcaaggatgatagt
gggataaaacgtatgaacttgattgcccgtgccgctgagtctattggcaatggggatatt
ttcaatgtacagattagaaaatatcggcaatggcagctttcccaaagtgcttgtctttca
tcctctatttttcctgctgcattgttgcgtgggcaaagagagacacttgagcagggagaa
aggaattttaatagatttggagggtggctgggaaagaactcaacacttggaaaaaatttg
aggctcttggaagatttgcatgtccatcttctcgcttctcgtgaatctagttcggggagg
gaaaccctgcgagttgaatacctttctcttcttctgaaacgattgaccgtgccactccgt
gaacttccaaaggatgaagctgtacacaaagttgtggatttcatgaatacttactccatt
agtcaggatgactttgatactattgtggagttatccaaatttcaggggcacccaaatcct
ctagatggcattcaaccagctgtaaaggcagcgctgacaaaagcttacaaagaaggcagc
aaaacaaggatggtacgagctgcagattttgtcactttccctggaatgaagaaggctcct
aagaagcggattgctgctattttagaaccatctgttgatgtaattggagagaacaatgat
gatactttggttgagagtgaagaggaaaattcgtcagatacagaggacttggaaggttct
gcggctggtgagaagctgcaacaggaacttaaaagtttgaatacaaaaggagtgcatgta
caattcgatttgaagggtgcaacaaattcaagtgcaaaaaagaagacaccaacaagcagg
ggtagaggtggttcatctgccgcagctgagaaaaaaggcggccaaggttcaggggctagt
ggaaagcgaaagagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (25)   
   Pfam (25)   
All databases (50)   

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