KEGG   Prunus avium (sweet cherry): 110770483
Entry
110770483         CDS       T05161                                 
Name
(RefSeq) uncharacterized protein LOC110770483
  KO
K06100  symplekin
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110770483
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pavi03021]
    110770483
   03019 Messenger RNA biogenesis [BR:pavi03019]
    110770483
Transcription machinery [BR:pavi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     110770483
Messenger RNA biogenesis [BR:pavi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     110770483
    U7-dependent histone pre-mRNA processing factors
     110770483
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N Adaptin_N HEAT_2 PRO8NT
Other DBs
NCBI-GeneID: 110770483
NCBI-ProteinID: XP_021830315
UniProt: A0A6P5TTA1
Position
Unknown
AA seq 1332 aa
MVGMMMVANSNERLASLMDSAILASDIPSKLDRLRQSKQDLAVQQDPALLSGLLPRLFEL
QSDRFSPVRKFATEMLGEIGLMHVELLPEIVPSLINVVSDGTPAVARQAITSGIHLFRCV
LEKVSIQGLHSSELDSLLESSWAWVLKLKEEIYSIAFRPGSGGIRLLALKFVESVILLYT
SDPNGSPEPPAHEGDLVEFNISWLRGGHPLLNIGDLTIEASKSLGLLLDQLRFPTVKSLG
NLVIIVLINSLSAIAKKRPAFYGRILPVLLGFDPSSAVINGVHVSGAHHALKNAFLTCLK
CTHKGAAPWRDRLVGALRKLKAGGLVEQAIPQASKINGSVEDGLDDSPITKEEKPTIKTS
NAVQSSSGRKRLGALDSSDLAEDEDVSGKRAKSISSVSEESVKECDMNISVSQDDISSSG
TTTSRGDSDSGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMYNFPPN
LPGAEGDESLMNMGIVGGDSRVKYPPSFIADVLSLTSTFPPIAALLDTHQSVSNDIVKPE
VEEEQVASVVDSAVASTGMDYEAENSTLPTGLPSSSEAFSSEMEKGCQPVPSDVHDMEYL
ESEIPGLDSSACNSGLSEPFVASSSALMDVEDASQEQVTSSCQRTQLNVLPSLSADKSEE
LSPRAAVADINSLVSSTATSVGLPSHLVLPKMSAPVVILADEEKDQLQKLAFTRIIEAYK
QIAITGGSQLRCSLLINLGVEFPLELDPWKLLQKHILADYTNNEGHELTLRVLYRLFGEA
EEEHDFFSSTTATSVYETFLLNAAETLRDSFPASDKSLSRLLGEVPYLPNSVLKLLECMC
SPGSSDTTEKETQGGDRVTQGLSTVWSLILLRPPFRDPCLKIALQSAVYHLEEVRMKAIR
LVANKLYPLSSIAQRIEDFAIEMLLSVKSGDATERTDAEGSKTESQKDSDLEKHSNEPPS
VSGNSKDISSDTHQSCNSQSVSSLSIAEAQRCLSLYFALCTKKHSLFHHIFSVYGSASKA
VKQAVHRHIPILVRTMGSSPDLLEIISDPPSGSENLLMQVLHTLTDGIVPSRELVFTVRK
LYDSKLKDVEILIPILPFLPKDEVMLIFPQLVNLQLDKFQAALARTLQGSSNSGPLLAPA
EILIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRT
VLQAIGAFPALVDFIMEILSRLVSKQIWKYPKLWVGFLKCAFLTKPQSFGVLLQLPPAQL
ENALKRTAALKAPLVAHASQPDVRSSLPRSILVVLGIVSDSQAQTSQSQAGDASNSDKEA
VTEKSKESSSAC
NT seq 3999 nt   +upstreamnt  +downstreamnt
atggtgggcatgatgatggtcgcgaactccaacgaaagactcgcgagtctcatggactca
gccatcttggcctctgacataccgtcgaagctcgaccggctacgccaatcaaagcaagat
ttggcggtccaacaagaccctgcgttgctctctgggctccttcctcgcctcttcgagctt
cagtccgaccggttcagtccggttcgaaaatttgccactgaaatgcttggcgaaattgga
ctgatgcacgtagaattattaccagaaattgtaccttcgttaattaatgttgtgagtgat
ggaacaccggctgttgctcgacaagccatcactagtgggattcatttatttcgttgcgtt
ctcgaaaaggtttcaattcagggtttacattctagtgaattggacagtttgcttgagtca
tcttgggcatgggtgttaaagttgaaggaggaaatatactcgatagcttttcggccagga
agcggggggataaggttgctagcactgaaatttgttgaatcagtcattcttctttacact
tctgatcctaatggctccccagagccccctgctcatgaaggggacttggtggaatttaat
atatcttggcttcgtggtggccatcccctactcaatattggagatttgacaattgaggct
agtaaaagtttgggtttattgcttgatcaacttaggttcccaactgtgaaatcgcttggt
aacttagtgatcattgtgcttattaatagtctttcagcaattgcgaagaagaggcctgca
ttctatggtcgcattttgcctgtattacttggatttgatccctcaagcgctgtcattaat
ggggtacatgtctctggggcacaccatgccttaaaaaatgccttcctcacctgcttaaaa
tgtacacacaagggagctgcaccgtggcgggatcgtttagttggggccttgagaaagttg
aaagctggagggttggtagagcaagccattcctcaagcttccaagattaatggaagtgtg
gaggatggactagatgattctccaattactaaggaggagaaacccacaattaaaacatct
aatgctgtgcaaagtagttctgggaggaaacggttaggagcactggatagtagtgacctt
gcagaggacgaagatgtttctggaaagcgtgccaaatcgatatctagtgtctctgaggaa
tcagtgaaagagtgcgatatgaatatttctgtgtctcaagatgacatttcttcaagtgga
actaccacttctagaggcgatagtgatagtggacctgtgcagcaacttgttgctatgttt
ggtgcattggtagctcaaggtgaaaaagcggttggttctttagaaattctcatctcaagt
atctctgctgacttgctagcagaggttgtgatggctaatatgtacaactttcctcccaat
cttcctggtgctgaaggagatgaatctctgatgaacatgggtatagttggcggtgattct
cgagtgaaatatccaccatcatttattgctgatgttctctcacttacaagtactttccct
ccgatagctgcactcctagatactcatcagtcagtgtccaatgatatagtgaaacccgaa
gtggaggaagaacaggtagcatctgtagttgacagtgctgttgcaagtactggcatggat
tatgaagctgaaaattctacgttgccgactggtttaccgtcttcatctgaagcattttca
tctgaaatggagaagggttgtcaacctgtgccatctgatgttcatgatatggaatatctt
gagagtgaaatacctgggctggattcttctgcttgtaatagtggattatcagaacccttc
gttgcatcctcatcagctttaatggatgtagaagatgcaagtcaagagcaagttaccagt
tcgtgtcaaaggacacaacttaatgtacttccatcactgtctgcggataagtctgaggag
cttagcccaagagctgccgttgcagatatcaatagcctggtttcttcaacagcaacttca
gttgggttgccctctcatcttgtcttgcccaagatgtcggcaccggtagtcatccttgct
gatgaagagaaggatcagttgcagaaattggcttttacgcgcatcatcgaggcatataag
caaatagctattactggaggttcacaattacgatgctctctccttataaatttaggagtt
gagttccctttggagttagacccatggaaactgctgcagaagcatatcttggcagattat
acgaataatgagggacatgagttgacattgcgtgtcctatacaggttattcggagaggca
gaagaggaacacgatttcttttcttcaacaactgctacttctgtatatgaaacgtttctt
ttgaatgcggcagaaacacttagagattcttttccagcgtctgacaaatcattaagcaga
ttacttggcgaggttccttatttaccaaattcagttctgaaattattggagtgcatgtgc
tcacctggaagcagcgacacaactgagaaggaaacacaaggtggggatcgagtgactcaa
ggtctcagcactgtgtggagcctgattttgctgaggcctcctttccgcgatccctgctta
aaaattgctttacagagtgcagtttatcatctggaggaagtgcgtatgaaggctatacgt
ctggttgcaaacaagctttatcctttgtcatccattgctcaacgaatagaagatttcgca
attgaaatgttgctttctgtaaaaagtggtgatgcaactgaaagaacagatgctgaagga
tcaaaaacagaatcacagaaggattctgatttggaaaagcattcaaatgaacctccatct
gtgagtggtaacagtaaagatatctcctctgatactcatcaatcatgcaattctcaaagt
gtgtcatccctttcaattgctgaggcccagcggtgtttgtcattatattttgctctatgt
acaaagaagcattccctttttcaccatatattttcagtttatggaagtgcatcaaaggct
gttaagcaggcagttcatcgtcacattccaatacttgtacgtactatgggatcgtcacca
gatcttcttgaaattatttctgatcctccaagtggaagcgagaacctcctgatgcaggtt
ttgcatacactgacagatgggatagttccttcacgagaactggtttttactgttaggaag
ttatatgattcaaaactgaaggatgtagagattcttattccaatattgccctttttaccg
aaagacgaggttatgcttatatttccccaacttgtgaatcttcaactggataagttccaa
gcagcactagctcgcacactacagggatcatccaattctggtcctcttcttgctccagct
gaaatcttgattgctatccatggaattgatcccgacagagatggaattccactaaagaag
gtcactgatgcatgcaacgcctgctttgagcagaggcagatattcacccaacaagttctt
gccaaagttttgaatcaattggttgagcagattccccttcctttactgttcatgcgtaca
gtattacaagccataggtgcttttcctgcactggtggattttataatggagatcctctct
cgacttgtgagcaagcagatatggaaatacccaaagttgtgggtgggattcttgaagtgc
gcgttcttgacaaagcctcagtcatttggcgtcctgcttcagctacctccagcacaacta
gaaaatgcactgaagagaactgcagctctgaaagcaccgttggttgctcacgctagccaa
ccggacgtccgatcttcacttccaaggtccatattggtagttctaggaattgtttcagat
tctcaggcacaaaccagtcagtctcaggcgggagatgcaagcaactcggataaggaggca
gtcacagagaaatcgaaggagtcatccagtgcttgttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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