KEGG   Pseudomonas avellanae: BKM03_24030
Entry
BKM03_24030       CDS       T05369                                 
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
pavl  Pseudomonas avellanae
Pathway
pavl02020  Two-component system
pavl02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pavl00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BKM03_24030
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BKM03_24030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pavl03021]
    BKM03_24030
Transcription machinery [BR:pavl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BKM03_24030
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR TrmO_C HTH_21
Other DBs
NCBI-ProteinID: AVB21931
UniProt: A0A6H3CWC8
Position
5005964..5007457
AA seq 497 aa
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSD
PLADNIEQKPNPDVQEPTYQESAPTVDNLEDGEWSERIPNELPVDTAWEDVYQTSASSLP
SNDDDEWDFTTRTSAGESLQSHLLWQLNVAPMSDKDRLIAVTLIDCINNQGYLDETLEEI
LESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLTEAQRLV
TDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq 1494 nt   +upstreamnt  +downstreamnt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggcaatccgcttacttcagctttccactctggacctccagcaggagattcaggaggcg
ctggagtcaaaccctatgctggaacggcaagaagaaggcgacgacttcgacaactccgac
ccgcttgccgacaacatcgaacaaaagcccaaccccgacgttcaggaaccgacctaccag
gaatccgcgcctaccgtggacaacctcgaggacggcgaatggagcgagcgcattcccaat
gaactgccggtcgatactgcctgggaagatgtctaccagaccagcgccagcagcctgccg
agcaacgacgatgatgagtgggacttcaccactcgcacctcggccggcgaaagcctgcaa
agccatctgctgtggcagctgaacgttgcaccgatgtccgacaaggaccgcctgattgcc
gttacgctgatcgactgcatcaacaatcagggctacctggacgagacgcttgaggagatt
ctcgagtctttcgacccggaactggacatcgaactcgacgaaatcgaagccgtactgcac
cgcatccagcagttcgaacctgcaggcatcggcgcgcgcaatctcagtgaatgcctgctg
ctgcaattgcgccagttgccggcaaaaacgccttggctgacagaagcgcagcgactggtc
accgattatatcgacctgctgggcagccgtgattatggccagctgatgcgccgcatgaag
ctcaaggaagacgagctgcgccaggtcatcgagctggtccagagcctcaacccgcgtccg
ggttcgcaaatcgaatccacagaagccgaatacgtcattcctgatgtgatcgtgcgcaag
gacaacgagcgctggctggtcgagctcaatcaggagtcggtgccgcgtctgcgcgtcaac
ccgcaatacgcaggcttcgtgcgtcgcgctgataccagcgccgacaacaccttcatgcgc
aaccagttgcaggaagcccgctggttcatcaagagcctgcagagccgcaacgaaacgctg
atgaaggtcgccacgcagatcgtggagcatcagcgcggtttcctcgagtacggcgacgag
gcgatgaagccgctcgtcctgcacgatatcgccgaagcggtcggcatgcacgagtcgacg
atctcgcgggtgaccacgcagaaattcatgcacaccccacgcggtatttacgagctgaaa
tacttcttctcgagccatgtgagcacctccgagggcggcgaatgctcgtccacggcaatt
cgcgcaatcatcaaaaaactggtggctgcggaaaatcagaaaaagccgttgagtgatagc
aagatcgctggtttactggaggcacaaggcattcaagtagcccgtcgcacagtcgccaag
taccgcgagtcactcgggatagcgccttccagtgagcgtaagcgattgatgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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