KEGG   Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a1258
Entry
PSEBR_a1258       CDS       T01472                                 
Name
(GenBank) RNA polymerase-associated protein HepA, ATP-dependent helicase HepA
  KO
K03580  ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
Brite
KEGG Orthology (KO) [BR:pba00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pba03021]
    PSEBR_a1258
Transcription machinery [BR:pba03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    RNA polymerase-associated proteins
     PSEBR_a1258
SSDB
Motif
Pfam: RapA_C Tudor_1_RapA Tudor_RapA Helicase_C SNF2-rel_dom ResIII DEAD
Other DBs
NCBI-ProteinID: AEA67438
UniProt: F2KCZ8
Position
complement(1551688..1554534)
AA seq 948 aa
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG
DVITHFEGWKMTVREVDDVDGLLVYHGLNGQNEVVTLPETQLSNFIQFRLASDRLFAGQI
DPLAWFSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA
SNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDQVSPQYALVEQL
AETIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLKAFRAESENYRPVAEAVQELLDK
GRLSPEAHKTIQGFLGNEGEALLTAVNDGDVEASARLVRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHAYPLPCPDEYLELPLGDHPELYPEVSFQAQPDASEEERWWRFDPRVEWLIDT
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVLFDLPAHPDLLEQRIGRLDRIGQKHTIELHAPYLETSP
QARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGQWQALIDEARTERERLE
AELHTGRDRLLELNSGGAGEGDALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDTNGNDLAARVSF
ETLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKIAPRHAERVAEAQRRLAADTDEEL
ARLTALQAVNPTVRDSELVALRQQREQGLAMLEKAALRLEAIRVLVAG
NT seq 2847 nt   +upstreamnt  +downstreamnt
atggcgcagcagtatcaaccggggcaacgctggatcagtgacagcgaagccgagctgggt
ttaggcaccgttctggcacaggacggccgcttgttgaccgtgctctatccggccactggc
gacactcgccagtacgcgctacggaatgcgccgctcacccgtgtacggttttcgccgggc
gatgtgatcactcacttcgaaggctggaaaatgaccgtgcgcgaagtcgatgacgtcgac
gggttgctggtctatcacggcctcaacgggcagaacgaagtcgtcaccctgccggaaacc
caactgtcgaactttatccagttccgcctggcgagcgaccgtctgttcgccggccagatc
gacccgttggcctggttctccctgcgctaccacaccctggaacacaccagccgccagtta
cagtcttcgctttggggcctgggcggcgttcgtgcccagcctatcgcccaccaattgcac
attgcccgtgaagtggccgaccgcattgcgccgcgggtattgctggcggacgaagtgggc
ctgggcaagaccatcgaggccggcctggtcatccaccgtcaactgctgtccggccgcgcc
aaccgcgtcctgatcctggtgccggaaaacctccagcaccaatggctggtggaaatgcgc
cggcgcttcaacctgcaggtcgcgctgttcgacgaagaacgcttcatcgaaagcgatgcc
agcaacccgttcgaagacactcaactggccctggtggcgctggagtggctggtggacgac
gagaaggcccaggacgcgctgttcgccgccggctgggacctgatggtggtcgacgaggct
catcacctggtgtggcacgaagatcaggtcagcccgcagtacgcgctggtcgaacaactc
gccgagacaatcccgggcgtgctgctgctgaccgcaaccccggaacaactgggccaggac
agccactttgctcgcctgcgcctgttggacccaaatcgcttccacgacctcaaggccttc
cgcgccgagagcgaaaactatcgcccggtggccgaagccgtgcaggagctgttggacaaa
ggccgtctttcgcctgaggcccacaagaccatacaaggcttcctgggcaatgaaggcgaa
gcgttgctgaccgcggtcaatgatggcgatgtcgaagccagtgctcgcctggtgcgtgaa
ctgctggaccgccacggcaccggccgcgtgctgtttcgcaacacccgcgcagcggtgcaa
ggcttccccgagcgcaagctgcacgcctacccgctgccgtgcccggacgagtacctcgag
ctgcccctgggcgatcaccccgagctgtacccggaagtcagcttccaggcccagccggac
gccagcgaagaagaacgctggtggcgtttcgacccgcgggtggagtggctgatcgacacc
ctgaagatgctcaagcgcaccaaagtactggtgatctgtgcccacgccgaaaccgccatg
gacctggaagacgccctgcgcgtgcgttccggtatcccggccacggtgttccacgaaggc
atgaacattctggagcgcgaccgcgcggcggcctatttcgccgacgaagagttcggtgcc
caggtgctgatctgttcggaaatcggcagcgagggccgcaacttccagttcgcccatcac
ctggtgctattcgatctgccagcgcacccggacttgctcgagcaacgcatcggtcgtctg
gaccggatcggccagaagcacaccatcgagctgcatgcgccgtacctggaaaccagcccg
caagcgcggctgttccagtggtatcacgaagccctgaatgccttcctcaacacctgcccg
actggcaacgccttgcagcatcagttcggcccgcgcctgctgccattgctggaagaagcc
gacgatggccagtggcaagcgctgatcgacgaagcccgcaccgaacgcgagcgcctggag
gccgagctgcacaccggtcgcgaccgtttgctggagctcaactccggcggcgctggcgaa
ggcgatgcgctggtggaagccattctcgagcaggacgaccagttcgccctgccgatctac
atggaaaccctgttcgacgcctttggtatcgacagcgaggatcattcggaaaacgcgctg
atcctcaagccgagcgaaaaaatgctcgacgccagcttcccgctgggcgacgacgaaggc
gtgaccatcacctacgaccgcaaccaggcgctgtcgcgcgaagacatgcagttcatcacc
tgggagcacccgatggtgcaaggcggcatggacctggtgctgtccggttccatgggcaac
accgccgtggcgctgatcaagaacaaggccctcaagcccggcaccgtgttgctggagctg
ctctacgtcagtgaagtagtggccccacgctcgctgcaactgggccgctacctgccgccg
gccgccctgcgctgcctgctggacaccaacggcaacgacctcgccgcccgggtctcgttc
gaaaccttgaacgaccagctcgaaagcgtgccccgtgccagcgccaacaagttcatccag
gcccagcgcgaccagctcacgccacggatcaatgccggcgaagaaaagatcgccccgcgt
cacgccgaacgcgtggccgaggcccaacgtcgcctggccgccgataccgacgaggaactg
gcccgcctgaccgccctgcaagcggtcaacccgaccgtgcgcgacagcgaactggtagcc
ctgcgccaacagcgcgagcaaggcctggcgatgcttgagaaggcggcgttgcgtttggag
gcgattcgggtgttggtggcgggctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (14)   

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