KEGG   Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a2838
Entry
PSEBR_a2838       CDS       T01472                                 
Name
(GenBank) Putative DNA ligase (ATP)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PSEBR_a2838
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pba03400]
    PSEBR_a2838
Enzymes [BR:pba01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PSEBR_a2838
DNA repair and recombination proteins [BR:pba03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PSEBR_a2838
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AEA69138
UniProt: F2KHD2
Position
3513766..3516381
AA seq 871 aa
MSSKTLDDYNRMRNFAATPEPAAKRSRKSAKTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKAKRLAVHVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGVWIPQDDP
HEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDQAARPESEYDVVQAEPN
SVLSDRTLVPKRRGKAAAAKAVKQPEKAVQAKSPRGAAKTTLSGAVAGPLPDTLKPELAT
LVESAPDGEWLYEIKFDGYRVMACIEHGDVRLLTRNGHDWTHKLPRQAEALAELGLESAW
LDGEMVVANDQGVPDFQALQNAFEAGSSGKIAYYLFDMPYLNGMDLRKVPVQERRAALAA
VLEPNESPLLRFSDAFEETPEALLNSACQMQMEGLIGKRIGSAYVSRRSNDWIKLKCKNR
QEFVVVGFSDPKGARSAFGALLLGLHDADSGQLRYAGKVGTGFNETTLKSIYQQLLPLET
KKAAVVNPPSGYEAKGVHWLEPTLLAEVAFAEMTKDGSVRHAVFHGLRNDKPAKDITQEL
VKPVKKTAAAKKTKAKHEPGATPAKTKSKAKAPALDGKVRITHPERVIDASSGTTKLQLA
EYYASVAEFILPELADRPVALVRAPDGIAGELFFQKNAERLAIPGITSLDKALTGQPVMI
INNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVL
DELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSGPKNR
VGRIFIDYLRNGLGATTICAYAARTREGLPVSVPVFREEVAELKGANLWNVHNVHERLAE
VGHEPWAGLKRTRQSITAEMRRRIGMRETDK
NT seq 2616 nt   +upstreamnt  +downstreamnt
atgagcagcaagaccctggatgactacaaccgcatgcgcaactttgccgccaccccggag
ccggcggcgaagcgctcgcgcaaatcggcgaagactgcccatgccttgcagttctgtatt
caaaaacacgacgcctcgcggctgcattacgattttcggctggagctggacggtgcgctc
aagagctgggcggtgcccaaaggcccctccctggacccgaaagccaagcgcctggcggtg
catgtcgaagaccatccgctggattacgccacgttcgaaggcaacatccccgagggccat
tacggcgccggtgacgttatcgtctgggatcggggcgtctggattccccaggatgatccc
catgaggcctatgaaaagggccggctcaagttcgaactgcaaggcgaaaagctcagcggc
ctgtggaacctggtgcgcacccacatgcctggcaagcaggagcagtggttcctgatcaaa
catcaggaccaggccgcccgccccgagagtgaatacgacgtggtccaggccgaaccgaac
agcgtgctcagcgatcgcaccctggtgcccaagcgccgcggcaaggccgctgcagccaaa
gcggtgaaacaaccggaaaaggccgtgcaggcgaaatcgccaagaggcgccgcgaaaacc
accctcagcggcgcggtcgccggaccgttgccggacaccctcaagccggaactggcaaca
ctggtggaaagcgcgcccgacggcgagtggctctatgaaatcaagttcgacggttaccgg
gtcatggcgtgcatcgaacacggcgacgtaaggctgctgacccgcaacggccatgattgg
acccacaaattgccaagacaggccgaagccctggctgagctgggcttggaatcggcctgg
ctcgacggcgagatggtggttgccaacgaccagggcgtgccggacttccaggccttgcag
aatgccttcgaggccggcagcagtggcaagatcgcctattacctgttcgacatgccgtac
ctcaatggcatggatttgcgcaaagtgccagtgcaagaacgccgggcggcattggccgca
gtgctggagcccaatgaaagccccttgctgcggttttccgatgctttcgaagaaactccc
gaagcgctgctcaacagcgcctgccagatgcagatggaagggttgatcggcaagcgcatc
ggcagtgcctatgtgtccaggcgcagcaacgactggatcaagctcaagtgcaagaatcgc
caggagttcgtggtggtgggcttcagcgatcccaagggcgctcgcagcgccttcggtgcc
ttgctgctggggctgcatgacgctgacagcggccagttacgctatgccggcaaggtcggc
accgggttcaacgaaaccacccttaaaagcatctaccagcaactgctgcccctggagacc
aaaaaggccgccgtggtcaacccgcccagcggttacgaagccaagggcgtgcactggctc
gaaccgacgctgttggccgaagtggcctttgccgaaatgaccaaggacggctcggtgcgc
catgcggtcttccatggcttgcgcaacgacaagccggccaaggacattacccaggagctg
gtcaagcccgtgaaaaaaaccgctgcggcaaaaaaaaccaaagccaagcatgagcctggc
gcgacaccggccaaaaccaagagcaaggccaaggcaccggccttggacggcaaggtccgc
atcactcatccggagcgggtcattgacgccagcagcggcaccaccaagctgcaactggcc
gagtactacgccagcgtggccgaattcatcctgccagaactggcggatcgcccggtggcc
ttggtcagggcgccggatggcatcgccggggaactgttcttccagaagaacgccgagcgc
ctggcgattcccggtatcaccagtctggacaaggcgctgaccgggcagccggtgatgatc
atcaacaacgccgaagcgctgatcggcgcggtgcagatgagcacggtggagctgcacacc
tggaacgccacctcggtcgatctggacaagcctgaccgcttcgttctcgaccttgacccg
gacccggcgctgccctggaaaagcatggtcgaggcgacgcagctcacgttatcggtgctc
gatgagctggggctcaaggcgttcctcaagaccagcggaggcaagggcatccatgtggtg
gtgccgctgacgcgcaagctgggttgggacgaggtcaaggggttcagccatgcgattgtc
agtcacatggccaagctgctgccggaccgtttttcggcggtgtccgggccgaagaatcgg
gtagggcggattttcatcgattacctgcgcaatgggttgggcgctaccaccatttgcgct
tacgccgcccggacccgggaagggttgccggtttcggtgcctgtttttcgtgaggaggtg
gccgagctcaagggggcgaatttgtggaatgtgcacaatgttcatgagcgtctggcggaa
gttgggcatgagccttgggcggggcttaagcggactcggcagagcattacggctgagatg
cgtaggcgtattggtatgagggagacggataagtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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