KEGG   Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a5095
Entry
PSEBR_a5095       CDS       T01472                                 
Name
(GenBank) DNA-directed RNA polymerase, beta chain
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pba00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PSEBR_a5095
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pba03021]
    PSEBR_a5095
   03400 DNA repair and recombination proteins [BR:pba03400]
    PSEBR_a5095
Enzymes [BR:pba01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PSEBR_a5095
Transcription machinery [BR:pba03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PSEBR_a5095
DNA repair and recombination proteins [BR:pba03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PSEBR_a5095
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED
Other DBs
NCBI-ProteinID: AEA71540
UniProt: F2KLZ7
Position
complement(6156070..6160143)
AA seq 1357 aa
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVQGEN
LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELQVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TGNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLNKDDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQEITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgttacttacgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttctccgggcgtgttc
ttcgaccacgaccgtggcaagacgcacagctccggcaaactgctttactccgcgcgcatc
attccttaccgcggttcgtggttggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggtactgctgcgcgcactcggctatacc
accgaagaagtgctggacgcgttctacaccaccaacgttttccatgtgcagggtgaaaac
ctcagcctggaactggtgcctcagcgcctgcgcggtgaaatcgctgtcctcgatatccag
gatgacaaaggcaaggttattgtcgagcagggtcgccgtatcaccgctcgccacatcaac
cagctggaaaaagccgggatcaaagagctgcaggtgcctctggactacgtcctgggtcgc
accacggccaaggtcatcgtgcatccggccaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcaaaaatcgccaaggcccaggtcgttcgcatcgagacg
ctgtacaccaacgacatcgactgcggtccgttcatctccgacacgctgaagatcgactcc
accggcaaccaactggaagccctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgccgccgaaacgctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgaaatcgaa
ggttcgggtgtattgaacaaggacgatatcgttgccgtcctcaagaccttggtcgacatc
cgtaacggcaagggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgt
gtaggcgaaatggccgagaaccagttccgtgttggcctggtgcgcgtagagcgtgcggtc
aaggaacgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagcctgtggctgcggcggtgaaggagttcttcggttcgagccagctgtcccagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtctccgcactcggcccg
ggcggtctgacccgtgagcgtgcgggcttcgaagttcgtgacgtacacccgactcactac
ggtcgtgtatgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gctgcctatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgtgtggtgaaa
gacgccctggtcaccgacgagatcgtgttcctgtccgccatcgaagaagctgatcatgtg
atcgcccaggcttcggccacgatgaacgacaagaaggtcctggtcgacgagctggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgta
tcgccgaagcaggtagtttcggttgcagcgtcgctgatcccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgccaagctgtacccaccctgcgtgcc
gacaagccgctggtaggtaccggcatggagcgcaacgttgcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgactccgtcgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
cgggttcagcgcagcgacatcatggccgacggtccgtccaccgatatgggtgaactggcg
ttgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagtaggcgcaggcgacatcctggtgggcaaggtcactccgaaaggcgagacccagctg
actccggaagaaaaactgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtgcctaccggcaccaagggtaccgtcatcgacgtacaagtcttcact
cgcgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagactcaactcgacgag
atccgcaaggacctgaacgaagagttccgtatcgtcgaaggcgcaactttcgagcgtctg
cgctccgctctggtcggccacaaagccgaaggcggcgccggcctgaagaaaggtcaggaa
atcaccgacgaagttctcgacggtcttgagcatggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggcccaggcctatatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccaaccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgatgtggtcctcaacccgttgggcgta
ccttcgcgtatgaacgtcggtcagatccttgaaacccacctgggcctcgcggccaagggc
ttgggcgagaagatcaaccgtatgatcgaagagcagcgcaaggtcgctgacctgcgtaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggacaccttctcc
gatcaggaaatcctggatctggcgaagaacctgcgcggcggcgttccaatggctactccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagatctgcca
gaaagcggccagatgcagctgttcgacggccgtaccggcaacaagttcgagcgcccggtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcgtacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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