KEGG   Pseudomonas brassicacearum DF41: CD58_28100
Entry
CD58_28100        CDS       T03174                                 
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
pbc  Pseudomonas brassicacearum DF41
Pathway
pbc03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pbc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CD58_28100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbc03400]
    CD58_28100
Enzymes [BR:pbc01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     CD58_28100
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     CD58_28100
DNA repair and recombination proteins [BR:pbc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     CD58_28100
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS
Other DBs
NCBI-ProteinID: AHL36496
UniProt: W8Q324
Position
complement(6271537..6272349)
AA seq 270 aa
MPELPEVETTRRGIAPHLEGQRVSRVVVRDRRLRWPIPEDLDVRLSGQRIVLVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGMPAAKHEHVDIELESGLALRYTDPRRFGAMLWSLD
PLNHELLIRLGPEPLTDLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRRAAGGISRARYLKLAIEIKRILAHAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GGELCKVCGTGLREIRLGQRASVWCPRCQS
NT seq 813 nt   +upstreamnt  +downstreamnt
atgccagaactgccggaagtcgaaaccacccgccgcggaatcgcgccccaccttgaaggc
cagcgggtcagtcgcgtggtggtacgtgaccgccgcctgcgctggccgattccggaagac
ctcgatgtgcggctttcggggcaacgcattgtgctggtggagcgacgggccaagtacctg
ctgatcaatgccgaagttggcaccttgatcagccatttgggcatgtccggcaacctgcgg
ttggtggaagtcggcatgcccgccgccaagcacgagcacgtggacatcgagctggaatcc
ggcctggccttgcgctacaccgacccgcggcgctttggggcgatgctctggagcctcgac
ccgctcaaccatgaactgctgatccgcctcgggccggaaccgttgaccgatctgttcgac
ggcgaacgtctgttccagctctcgcgtggccgctccatggcggtcaagcctttcatcatg
gacaacgcggtggtggtgggcgtgggcaacatttatgcgaccgaggcgctgttcgccgcc
ggcatcgacccgcgtcgggcggccggaggtatttcccgggcgcgttacctgaagctggcg
atcgagatcaaacgcatcctcgcccacgccatcgagcgcggcggtaccacgctgcgtgat
ttcatcggtggcgatggccagcccggctacttccagcaggaattgttcgtctacggtcgg
ggcggtgagctgtgtaaggtttgtggcacggggctgcgggaaatccgcctgggccagcgc
gccagtgtctggtgtccgcgctgtcagagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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