KEGG   Candidatus Promineifilum breve: CFX0092_A1016
Entry
CFX0092_A1016     CDS       T05438                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
pbf  Candidatus Promineifilum breve
Brite
KEGG Orthology (KO) [BR:pbf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pbf03016]
    CFX0092_A1016
Enzymes [BR:pbf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     CFX0092_A1016
Transfer RNA biogenesis [BR:pbf03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    CFX0092_A1016
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS DUF4126 HVSL
Other DBs
NCBI-ProteinID: CUS02894
UniProt: A0A160T0A9
Position
I:1164937..1165554
AA seq 205 aa
MREEGRFAKPPYNFAMSTIRAFIAIDLPADVKIALGQIAATLGDGLPRGAVRWVRPEQMH
LTLTFLAETPVAKVPAIQSAMDTIAAQQQPFALALAGIGCFPNRRRPRVVWVGLAAAAGS
GESAPLLALKAALDAALTPLGLPPEDKPFRAHLTLGRVKDEPAAQAVAWATPVPRLEVPV
TAIHLIESQLRPDGSVHTVRHTSRF
NT seq 618 nt   +upstreamnt  +downstreamnt
atgcgtgaagaggggcggtttgccaaaccgccctacaattttgccatgagtaccatccgc
gccttcatcgccattgacttgccggccgatgtgaaaatcgccctcggccaaatcgccgcg
acgttgggcgacggcctgccgcgcggcgcggtgcgctgggtgcggccggagcagatgcac
ctgacgctaaccttcctggcggagacgcccgtggcgaaggtgccggccattcaaagcgcg
atggacaccatcgccgcccagcaacagcccttcgccctggcattggctggcatcggctgc
ttccccaatcgccgccggccgcgcgtcgtctgggtcgggctggccgccgccgccgggagt
ggggagagcgcgccgctattggcgctcaaagcggcactggacgcagcgctgaccccgctc
ggcttgccgcccgaagacaaaccgtttcgcgcccatctgaccctcggccgcgtcaaggac
gagcccgccgcgcaagccgtcgcctgggcgacacccgtgccccgcctggaagtcccagtc
accgccatccacctgatcgaaagccaactacgaccggatggctcggtccacacagttcga
cacacaagcaggttctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system