KEGG   Caldimonas brevitalea: AAW51_3841
Entry
AAW51_3841        CDS       T04216                                 
Name
(GenBank) RNA polymerase subunit sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
pbh  Caldimonas brevitalea
Pathway
pbh02020  Two-component system
pbh02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pbh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AAW51_3841
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    AAW51_3841
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pbh03021]
    AAW51_3841
Transcription machinery [BR:pbh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AAW51_3841
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR HTH_38 HTH_3 Sigma70_r4_2 HTH_23 Sigma70_r4 HTH_5 HTH_AsnC-type
Other DBs
NCBI-ProteinID: AKJ30532
UniProt: A0A0G3BM97
Position
complement(4560945..4562381)
AA seq 478 aa
MNAPVIRLEHRQHQTLTPRLQQAVRLLQLSSLDFAQEVQQAVGSNPFLEEDADAHASAAA
APEAATAEAVPTWADVTPVAAPAADQTWDRESWGSPGGGSSRGSSGDGELDLVEMVAADV
SLRQHLHSQINVMPLSQRDRTLAGTIIEALDDDGYLRLTLDELQGLTGCAPPADETEMNV
ALKLVQSLDPSGIAARDVRECLLLQLKDIEQPAEQELARRIVKEHLDRLATRDVNGLARA
LSASVAQVEAVCERIRHLDPRPGWRFGPSNTQFVTPDVIVRKVRGVWTATLNPDVIPKVR
LNQVYAELFQRHRDSGHSELAAHLQEARWTVRNVEQRFATILHVAQAIVKRQRHFLEYGA
LAMKPLGLREIAEELGLHESTVSRVTNNKYMATPLGVFELKYFFSRALPTVSGGSCSATA
IRGVIKDMIEAEDASDPLSDAQIARQLARQGLSVARRTVTKYRQMMRLPSVEKRRKHV
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgaacgcaccggtcattcgacttgagcaccggcaacaccagaccctgacgccgcgcttg
caacaggccgttcgcctgctccagctgtcgtcgctcgacttcgcacaggaggttcagcaa
gcggtcggcagcaaccccttccttgaggaagacgccgacgcccacgcgagcgccgctgcg
gcccctgaagcggccaccgccgaggcggtgccgacctgggccgacgtgacccccgtcgca
gcgcccgctgccgaccagacctgggaccgcgagagctggggctcgccgggcggcggctcg
tcgcggggcagcagcggcgacggtgaactcgatctggtcgagatggtcgcggccgacgtg
tcgctgcgccagcacctgcacagccagatcaacgtgatgcccttgtcgcagcgcgaccgc
accctcgccggcaccatcatcgaggcactcgacgacgacggctacctgcgcctgacgctg
gacgagttgcaaggcctgaccggttgcgcgccgccggcggacgaaaccgagatgaatgtc
gcgctgaagctggtgcaatcgctcgacccgagcggcatcgcggcccgcgacgtgcgcgag
tgtctgctgctgcagctcaaggacatcgagcagccggcggaacaagaactggcccggcgt
atcgtcaaggagcacctcgaccgccttgccacgcgcgacgtcaacgggttggcgcgcgcg
ctgagcgcgagcgtcgcgcaggtggaggcggtgtgcgagcgcatccgccatctcgacccg
cggcccggctggcgcttcggcccgtccaacacgcagttcgtgacgcccgacgtgatcgtg
cgcaaggtgcgcggtgtgtggaccgccacgctgaaccccgacgtgatccccaaggtgcgt
ttgaaccaggtctacgcagagttgttccagcggcaccgcgactcggggcactccgagctg
gcggcccacctgcaggaggcgcgctggacggtgcgcaacgtcgaacagcggttcgccacc
atcttgcatgtggcccaggcgatcgtgaagcggcagcgtcacttcctcgaatacggcgcg
ctggcgatgaagccgctgggcctgcgcgagattgccgaggaactggggttgcacgagtcg
accgtctctcgcgtcaccaacaacaagtacatggccaccccgctgggtgtgttcgagttg
aagtatttcttctcgcgcgccttgcccaccgtcagcggcggctcgtgctcggcgacggcg
atccgcggtgtgatcaaggacatgatcgaggccgaggacgcctccgaccccttgtccgat
gcccagatcgcccgccaactcgcgcgacaggggctgagcgtggcccgacgcaccgtcacc
aagtaccgccagatgatgcgtttgccgtcggtcgagaagcgccgcaagcacgtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (29)   

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